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The map label for this gene is rbfA

Identifier: 116624265

GI number: 116624265

Start: 6510762

End: 6511133

Strand: Direct

Name: rbfA

Synonym: Acid_5183

Alternate gene names: 116624265

Gene position: 6510762-6511133 (Clockwise)

Preceding gene: 116624264

Following gene: 116624268

Centisome position: 65.33

GC content: 63.17

Gene sequence:

>372_bases
ATGGATGAACGTCGCACATTACGCGTCTCCGAAGCCGTCCGCGAGGAGCTCTCCGAAATCATCAGCTTCGAAATGGACGA
CCCCCGCGTACTCGAAGCCGAGGTGACCGAAGTCATGGTGAGCCCCGATTCGCGCCACGCCTCCATCAAGATCGCCTGCC
GTGGCGATGAGAAAAAACAGAACCACGCGATCGCAGCCCTGGAGCACGCGGCGGGCTACCTGCGCCGTGAACTGGCATCC
CGCCTGCAGCTCCGCCACGTCCCCGAACTGCACTTCGAGCGCGACAAGAATCCCGACGTCGAAAGCCGCGTGGACTTCCT
CCTCCGCCGCGCCCGCCGCACCAAAGGCCGCGAAGAAAACCCCTCAAGCTAA

Upstream 100 bases:

>100_bases
CCAACGTGGAGTGGATCGAATAGAGCCGCGACCGTAAGGGAGCGTCACGAGTTTATTTTGACGAGCCGCGACCGTAAGGG
AGCGTCCACGAATTTGTCCT

Downstream 100 bases:

>100_bases
CTACAGCTTTCTTCTGATCCGTGTTCATCCGCGGCCCATAAACAATTTGCCTGCCCGGTCAATTCACCGAGAGCACGGTA
AGCTTATCGCCGCTCATAAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 123; Mature: 123

Protein sequence:

>123_residues
MDERRTLRVSEAVREELSEIISFEMDDPRVLEAEVTEVMVSPDSRHASIKIACRGDEKKQNHAIAALEHAAGYLRRELAS
RLQLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREENPSS

Sequences:

>Translated_123_residues
MDERRTLRVSEAVREELSEIISFEMDDPRVLEAEVTEVMVSPDSRHASIKIACRGDEKKQNHAIAALEHAAGYLRRELAS
RLQLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREENPSS
>Mature_123_residues
MDERRTLRVSEAVREELSEIISFEMDDPRVLEAEVTEVMVSPDSRHASIKIACRGDEKKQNHAIAALEHAAGYLRRELAS
RLQLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREENPSS

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_SOLUE (Q01W29)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_826421.1
- ProteinModelPortal:   Q01W29
- SMR:   Q01W29
- STRING:   Q01W29
- GeneID:   4426600
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_5183
- NMPDR:   fig|234267.9.peg.4918
- eggNOG:   COG0858
- HOGENOM:   HBG751055
- OMA:   ASIKIAC
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- InterPro:   IPR020053
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14287; Mature: 14287

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDERRTLRVSEAVREELSEIISFEMDDPRVLEAEVTEVMVSPDSRHASIKIACRGDEKKQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCH
NHAIAALEHAAGYLRRELASRLQLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREEN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
PSS
CCC
>Mature Secondary Structure
MDERRTLRVSEAVREELSEIISFEMDDPRVLEAEVTEVMVSPDSRHASIKIACRGDEKKQ
CCCCHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHCCCCCCCEEEEEEECCCCCCH
NHAIAALEHAAGYLRRELASRLQLRHVPELHFERDKNPDVESRVDFLLRRARRTKGREEN
HHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCC
PSS
CCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA