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The map label for this gene is ydiF [H]

Identifier: 116624268

GI number: 116624268

Start: 6512869

End: 6514461

Strand: Direct

Name: ydiF [H]

Synonym: Acid_5186

Alternate gene names: 116624268

Gene position: 6512869-6514461 (Clockwise)

Preceding gene: 116624265

Following gene: 116624269

Centisome position: 65.35

GC content: 64.66

Gene sequence:

>1593_bases
ATGTCTTTACTGTCTCTATCCGAACTCTCGTTTGAATATCCGTCCGGCCCAATCCTGTTCGACAACGTCTCGTTCCCAAT
CAATCCCGGCGATCGCATCGCGATCGTCGGCCCCAACGGCTCGGGCAAATCCACGCTCCTCCGGCTGATTGCCGGGAATC
TCGAGCCGTCCCGCGGCAGCGTCGTCCGCCGCCGCGATCTCCAGATAGCCGTTGCCGATCAGGAGATCCTTGCGGGACCT
CCCCATACGCTGTTTGAATTCGTCTATGGCGCGTTCCCCGTCCTGGCGCAATTGCGCGCCGCAATTCGCGGTCTCGAGCC
GCACCTCTCCGACCCCGCGCGCGCCGCCGAGTACGCCTGCCGCATCCACGAATATCAGGACTCGGGCGGATTCCTGGCCG
AAGCCGCAGTGGCTCGAACACTCACCGGCCTCGGCTACCTTCCCGGCCACTTCGATCGCGACCTCCACTCTCTCTCCGGC
GGTGAACGCACCCGCGCCGCGCTGGCCCGCGCGCTCTCCACCGATGCCGGCCTGCTGATCCTGGACGAGCCAACCAATCA
TCTCGACATCGCCGCTCGGGAATGGCTGGAATCCACTCTCGCTTCGCGCGCAACACCCTGTGTCATCACCTCGCATGACC
GCGCGCTCCTCTCCGCCTTCGCCAACCGCATCGTGGAAATCGAGCGCTCGAAGGTAACGGTCTTTGAATCTGGTTATGCG
GACTACCGGGGCGCGCGCGCGGTGCTTCTCCGGCAGGCCTGGTCGGCCTATGCAGCCTTTGAGCGCCGCAAAGCCGCCCT
CACCCGTGCCGCCCGCCGCAGGGATCAACTCTCCGCGCGAGTGGCGGTCGCTCCCGAGGGCATACGCCTCGGCAAAGACC
ACTACGCGCGCAAAGCGGCCAAGATCGCCCGTACCGCACGCATCCTCCGGGAGCGAGTCGGCGAGGAAGAGCGCGTCGAA
AAGCCCTGGGAGGAAACCCTGATCGAGGGCTTGACGTTTGACCGCGTTACCCGCAGCGGCGATGTTGTCGTCGCCGCCGC
CGGGCTCGCCAAGTCTTACAACTCGAAGACCCTTTTCCGGGATCTCACCTTTCACGTCCGCCGCGGAGACCGCCTTGCCA
TCATGGGGCCCAGCGGCTCGGGCAAAACAACCCTGCTGAACCTGATCCACGGAACCGCTCCTGCCGATTCCGGCTCCGTT
CACCTCGGCGCCAACGTGGAAATCGGCAGCGTCGGACAAAGCCCCGCCGCACTCCACCTCCAGCTCACCCCACTGGATCT
CTGCGGCTCCGGTACCGCGGCGCGCACGCTCCTCGCCTGTCTCAAGCTCCGCCCCGATCGACTCAACCGTCCCCTTCACG
AACTCAGCGGAGGCGAGCGAACCAAAGTGGCGCTGGCCCGCATCCTCACCTGCGGAGCCAATCTGCTGCTCCTCGACGAG
CCGACCAATCATCTCGAGATCGAAGCGCAGGAGGCCCTAGAACAGGCTCTTCGGCTGTATCCCGGCACCGTCATCGTCGT
CTCCCACGACCGCTTCTTTCTCGATGCGCTCGGCCCTGGAGTATCCTTCCTGACATTCTCTTCTTCGACTTAA

Upstream 100 bases:

>100_bases
AGCTCCCGTGCTAACGTAAGAAGGCGATGCGTCGGTAAAGACCTACCTCACCTGTTTTCCGCTTTTGTTCCCGCGGCTCA
ACGGCTGCCCTTGAGGTGTT

Downstream 100 bases:

>100_bases
TTTTTCGCTTGACGCGCCCTGCTCATTTAATCTACGATGTAGTTCAAATGGCTCTCACACCGTCGCTCGGGGAATTCGAA
CAGGTGGTTCTATTGGCCAT

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 530; Mature: 529

Protein sequence:

>530_residues
MSLLSLSELSFEYPSGPILFDNVSFPINPGDRIAIVGPNGSGKSTLLRLIAGNLEPSRGSVVRRRDLQIAVADQEILAGP
PHTLFEFVYGAFPVLAQLRAAIRGLEPHLSDPARAAEYACRIHEYQDSGGFLAEAAVARTLTGLGYLPGHFDRDLHSLSG
GERTRAALARALSTDAGLLILDEPTNHLDIAAREWLESTLASRATPCVITSHDRALLSAFANRIVEIERSKVTVFESGYA
DYRGARAVLLRQAWSAYAAFERRKAALTRAARRRDQLSARVAVAPEGIRLGKDHYARKAAKIARTARILRERVGEEERVE
KPWEETLIEGLTFDRVTRSGDVVVAAAGLAKSYNSKTLFRDLTFHVRRGDRLAIMGPSGSGKTTLLNLIHGTAPADSGSV
HLGANVEIGSVGQSPAALHLQLTPLDLCGSGTAARTLLACLKLRPDRLNRPLHELSGGERTKVALARILTCGANLLLLDE
PTNHLEIEAQEALEQALRLYPGTVIVVSHDRFFLDALGPGVSFLTFSSST

Sequences:

>Translated_530_residues
MSLLSLSELSFEYPSGPILFDNVSFPINPGDRIAIVGPNGSGKSTLLRLIAGNLEPSRGSVVRRRDLQIAVADQEILAGP
PHTLFEFVYGAFPVLAQLRAAIRGLEPHLSDPARAAEYACRIHEYQDSGGFLAEAAVARTLTGLGYLPGHFDRDLHSLSG
GERTRAALARALSTDAGLLILDEPTNHLDIAAREWLESTLASRATPCVITSHDRALLSAFANRIVEIERSKVTVFESGYA
DYRGARAVLLRQAWSAYAAFERRKAALTRAARRRDQLSARVAVAPEGIRLGKDHYARKAAKIARTARILRERVGEEERVE
KPWEETLIEGLTFDRVTRSGDVVVAAAGLAKSYNSKTLFRDLTFHVRRGDRLAIMGPSGSGKTTLLNLIHGTAPADSGSV
HLGANVEIGSVGQSPAALHLQLTPLDLCGSGTAARTLLACLKLRPDRLNRPLHELSGGERTKVALARILTCGANLLLLDE
PTNHLEIEAQEALEQALRLYPGTVIVVSHDRFFLDALGPGVSFLTFSSST
>Mature_529_residues
SLLSLSELSFEYPSGPILFDNVSFPINPGDRIAIVGPNGSGKSTLLRLIAGNLEPSRGSVVRRRDLQIAVADQEILAGPP
HTLFEFVYGAFPVLAQLRAAIRGLEPHLSDPARAAEYACRIHEYQDSGGFLAEAAVARTLTGLGYLPGHFDRDLHSLSGG
ERTRAALARALSTDAGLLILDEPTNHLDIAAREWLESTLASRATPCVITSHDRALLSAFANRIVEIERSKVTVFESGYAD
YRGARAVLLRQAWSAYAAFERRKAALTRAARRRDQLSARVAVAPEGIRLGKDHYARKAAKIARTARILRERVGEEERVEK
PWEETLIEGLTFDRVTRSGDVVVAAAGLAKSYNSKTLFRDLTFHVRRGDRLAIMGPSGSGKTTLLNLIHGTAPADSGSVH
LGANVEIGSVGQSPAALHLQLTPLDLCGSGTAARTLLACLKLRPDRLNRPLHELSGGERTKVALARILTCGANLLLLDEP
TNHLEIEAQEALEQALRLYPGTVIVVSHDRFFLDALGPGVSFLTFSSST

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI10947135, Length=507, Percent_Identity=30.1775147928994, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI69354671, Length=507, Percent_Identity=30.1775147928994, Blast_Score=161, Evalue=2e-39,
Organism=Homo sapiens, GI148612853, Length=503, Percent_Identity=28.2306163021869, Blast_Score=152, Evalue=9e-37,
Organism=Homo sapiens, GI10947137, Length=518, Percent_Identity=27.2200772200772, Blast_Score=152, Evalue=1e-36,
Organism=Homo sapiens, GI27881506, Length=518, Percent_Identity=27.2200772200772, Blast_Score=151, Evalue=1e-36,
Organism=Homo sapiens, GI9665248, Length=204, Percent_Identity=29.9019607843137, Blast_Score=70, Evalue=5e-12,
Organism=Escherichia coli, GI1787182, Length=530, Percent_Identity=31.5094339622642, Blast_Score=226, Evalue=4e-60,
Organism=Escherichia coli, GI2367384, Length=514, Percent_Identity=32.8793774319066, Blast_Score=223, Evalue=2e-59,
Organism=Escherichia coli, GI1787041, Length=530, Percent_Identity=29.622641509434, Blast_Score=219, Evalue=2e-58,
Organism=Escherichia coli, GI1789751, Length=516, Percent_Identity=29.6511627906977, Blast_Score=198, Evalue=9e-52,
Organism=Escherichia coli, GI87081791, Length=238, Percent_Identity=31.5126050420168, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1786563, Length=183, Percent_Identity=32.7868852459016, Blast_Score=80, Evalue=3e-16,
Organism=Escherichia coli, GI1788165, Length=186, Percent_Identity=31.7204301075269, Blast_Score=78, Evalue=2e-15,
Organism=Escherichia coli, GI1787370, Length=196, Percent_Identity=29.5918367346939, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1788761, Length=196, Percent_Identity=30.6122448979592, Blast_Score=73, Evalue=4e-14,
Organism=Escherichia coli, GI145693107, Length=510, Percent_Identity=24.9019607843137, Blast_Score=73, Evalue=5e-14,
Organism=Escherichia coli, GI1787105, Length=245, Percent_Identity=28.5714285714286, Blast_Score=70, Evalue=2e-13,
Organism=Escherichia coli, GI87081834, Length=238, Percent_Identity=28.9915966386555, Blast_Score=70, Evalue=5e-13,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=29.646017699115, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1790739, Length=191, Percent_Identity=32.4607329842932, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI1788506, Length=250, Percent_Identity=27.2, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI1787758, Length=157, Percent_Identity=30.5732484076433, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1789593, Length=163, Percent_Identity=30.0613496932515, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1788225, Length=255, Percent_Identity=27.4509803921569, Blast_Score=64, Evalue=3e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=504, Percent_Identity=28.7698412698413, Blast_Score=184, Evalue=8e-47,
Organism=Caenorhabditis elegans, GI17555318, Length=520, Percent_Identity=27.8846153846154, Blast_Score=164, Evalue=8e-41,
Organism=Caenorhabditis elegans, GI17553372, Length=507, Percent_Identity=27.810650887574, Blast_Score=125, Evalue=4e-29,
Organism=Caenorhabditis elegans, GI17569143, Length=276, Percent_Identity=27.536231884058, Blast_Score=69, Evalue=6e-12,
Organism=Saccharomyces cerevisiae, GI6320874, Length=542, Percent_Identity=26.1992619926199, Blast_Score=147, Evalue=5e-36,
Organism=Saccharomyces cerevisiae, GI6321121, Length=543, Percent_Identity=26.5193370165746, Blast_Score=128, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6324314, Length=245, Percent_Identity=27.7551020408163, Blast_Score=86, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6325030, Length=398, Percent_Identity=24.6231155778894, Blast_Score=85, Evalue=2e-17,
Organism=Saccharomyces cerevisiae, GI6323278, Length=169, Percent_Identity=31.3609467455621, Blast_Score=73, Evalue=1e-13,
Organism=Drosophila melanogaster, GI24641342, Length=516, Percent_Identity=28.8759689922481, Blast_Score=179, Evalue=3e-45,
Organism=Drosophila melanogaster, GI24666836, Length=519, Percent_Identity=29.6724470134875, Blast_Score=171, Evalue=1e-42,
Organism=Drosophila melanogaster, GI24642252, Length=519, Percent_Identity=28.9017341040462, Blast_Score=167, Evalue=1e-41,
Organism=Drosophila melanogaster, GI18859989, Length=519, Percent_Identity=28.9017341040462, Blast_Score=167, Evalue=1e-41,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 57372; Mature: 57241

Theoretical pI: Translated: 8.69; Mature: 8.69

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
1.3 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLSLSELSFEYPSGPILFDNVSFPINPGDRIAIVGPNGSGKSTLLRLIAGNLEPSRGS
CCCCCCHHCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
VVRRRDLQIAVADQEILAGPPHTLFEFVYGAFPVLAQLRAAIRGLEPHLSDPARAAEYAC
EEEEECCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RIHEYQDSGGFLAEAAVARTLTGLGYLPGHFDRDLHSLSGGERTRAALARALSTDAGLLI
HHHEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEE
LDEPTNHLDIAAREWLESTLASRATPCVITSHDRALLSAFANRIVEIERSKVTVFESGYA
ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHEEEECCEEEEEECCCC
DYRGARAVLLRQAWSAYAAFERRKAALTRAARRRDQLSARVAVAPEGIRLGKDHYARKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHH
KIARTARILRERVGEEERVEKPWEETLIEGLTFDRVTRSGDVVVAAAGLAKSYNSKTLFR
HHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEECCHHHCCCCCHHHH
DLTFHVRRGDRLAIMGPSGSGKTTLLNLIHGTAPADSGSVHLGANVEIGSVGQSPAALHL
HHHHEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCEEECCCCCCCCEEEE
QLTPLDLCGSGTAARTLLACLKLRPDRLNRPLHELSGGERTKVALARILTCGANLLLLDE
EECCHHCCCCCHHHHHHHHHHHCCHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEC
PTNHLEIEAQEALEQALRLYPGTVIVVSHDRFFLDALGPGVSFLTFSSST
CCCCEEEEHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEEEECCCC
>Mature Secondary Structure 
SLLSLSELSFEYPSGPILFDNVSFPINPGDRIAIVGPNGSGKSTLLRLIAGNLEPSRGS
CCCCCHHCCCCCCCCCEEECCCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCC
VVRRRDLQIAVADQEILAGPPHTLFEFVYGAFPVLAQLRAAIRGLEPHLSDPARAAEYAC
EEEEECCEEEEECCHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHH
RIHEYQDSGGFLAEAAVARTLTGLGYLPGHFDRDLHSLSGGERTRAALARALSTDAGLLI
HHHEECCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHCCCCHHHHHHHHHHHCCCCCEEE
LDEPTNHLDIAAREWLESTLASRATPCVITSHDRALLSAFANRIVEIERSKVTVFESGYA
ECCCCCCHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHEEEECCEEEEEECCCC
DYRGARAVLLRQAWSAYAAFERRKAALTRAARRRDQLSARVAVAPEGIRLGKDHYARKAA
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCEEEEECCCCCCCCHHHHHHHHH
KIARTARILRERVGEEERVEKPWEETLIEGLTFDRVTRSGDVVVAAAGLAKSYNSKTLFR
HHHHHHHHHHHHCCCHHHHCCCHHHHHHCCCCHHHHCCCCCEEEEECCHHHCCCCCHHHH
DLTFHVRRGDRLAIMGPSGSGKTTLLNLIHGTAPADSGSVHLGANVEIGSVGQSPAALHL
HHHHEEECCCEEEEECCCCCCCHHHHHHHHCCCCCCCCCEEECCCEEECCCCCCCCEEEE
QLTPLDLCGSGTAARTLLACLKLRPDRLNRPLHELSGGERTKVALARILTCGANLLLLDE
EECCHHCCCCCHHHHHHHHHHHCCHHHHCCCHHHCCCCCHHHHHHHHHHHCCCCEEEEEC
PTNHLEIEAQEALEQALRLYPGTVIVVSHDRFFLDALGPGVSFLTFSSST
CCCCEEEEHHHHHHHHHHHCCCEEEEEECCCEEEECCCCCCEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: Endonuclease; Excision [C]

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9202461; 9384377 [H]