| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is atoS [C]
Identifier: 116624258
GI number: 116624258
Start: 6500801
End: 6503371
Strand: Direct
Name: atoS [C]
Synonym: Acid_5176
Alternate gene names: 116624258
Gene position: 6500801-6503371 (Clockwise)
Preceding gene: 116624254
Following gene: 116624259
Centisome position: 65.23
GC content: 63.63
Gene sequence:
>2571_bases ATGGATCGGCTCCGCCGAAAGAACCTGCTGGCGTCCCACAACCTCTGGCTCACAGTGGCGATCACGATCGTGATCGCGAT CGCAGTTTATTCCAAGATGGATGCCGAAGCCTTTCGCGAAGCCGCGGATCGCGCAACCCGCTCGCGCGCGGTTATGGAAA CCTCCCAGCGGCTCTTTTCCTTGCTTCGGGATGCCGACAGCGGGCATCGCAGTTACCTGCTCACCGGCGATTCCCGGTAT CTGGCGGCTTACAACGGAACCCTTCCCAAATTGCAGGATGCCATGCGCGACCTGACGGGCGCGACGGGCCCCGCAGCCCC GGAGTTGACCCGCTTTGCCGCGATCATCCACGCCAAACTCGATGAGCTCGCGCAGGGCATCCGCATCCGTCAACAAGGCG ACGCGGCCGCGGCCATGGAGATCGTCCGCTCCGATCGCGGCAGGCAAAGCATGGACGAGCTTCGTGCCTTCTCCGCGCAG ATCGTCCAAAACGAATATCCGCGCCTCGAAGGCTGGCGCGCCAGCGCGATGCATCACGGCTACCAGACCAGGGTTTTGGT TCAGGTCGGCGCACTCGGCCTGGCTCTCATGCTCTTCTTCGCTAACCGCCGCATCAATCACCTGCTTCATTCGCAGCAGA AACTGATCGAAGATCTGGATGCCAGCCGCGAACGCGAGTCGCGCGACCGCGCCGCTTTGGCCACCACCCTGCGCAGCATC GGCGACGCCGTCATCACCACTGATGGGCAGGGCCGCGTGCAGTTCGTAAATGCGGTCGCTGAGGCGCTCACCGGCTGGAC CGCCGGCGATGCCGAAGGCCGCCCGCTCCCCGATGTCTTTCGCGCCGAGGATGAGGCCACCCGCCGGCCGGCCGAAGATC TTACCGCCCGAGTTCTACGCGAAGGCGCGCTGGTCGGCCCCGCCAACCACACCATCCTAGTCGCCAGGGACGGCCGCGAA ATCCCCATCGACGATAGCGCCGCACCCATTCACGATGAGCAGGGCAACATCGCTGGCGTAGTACTCGTATTCCGCGATGT CACCCTGCGGCGCCGCGCGCAGCGCCACCTGGAAGATTCCGAGAGCCGCTATCGCCTGCTCTTCGAGTCCAACCCTTCGC CGATGTGGGTCTATGACACCGCCACTCTTGCCTTTCTCGCGGTCAACGCCGCCGCCACCGCGCACTACGGGTACAGCCGC GAAGAGTTCCTCAGCATGACCCTCCGCGATATCCGCCCGCCCGAAGACGTGCCGGCGCTAATCGCGGACACACACATTCC TACCACCGAAGCGCATACCGATGGACCCTGGCGCCATCGCAAGAAGGACGGCAGCGTGATCTTCGTCGAAATCACCGCGC ATCCCATCTGCTTCGGCGGCGCCAACGCAGTCCTCGTCATGGCCACCGATATCACCGAGCGCAGGGGACTCGAGGAACAA CTGCGCCAGGCCCAGAAACTGGAGGCCGTGGGACAACTCGCCGGTGGAATTGCGCACGATTTCAATAATCTCCTGACCGT GATCGAAGGCTACGCCGAAATGATCCGCGCCGATCAGGCGGCCGACGACCCGCAGCGCGAACCCCTCGATGAGATCCTGG TGGCCGCGCAACGGGCCGCGTCCCTGACCCGCCAGTTGCTCGCCTTTAGCCGCCGCCAGGTATTGCAGCCTGTCCGGCTC AGCCTGAATGCCAATGTCGCCAGTACGCAAAGGATGCTCAGCCGCCTCTTAGGCGAGGACATTCAGATCAAGATCCAGGC TGCCGAAAATCTATGGGATGTGTGGGCTGACCCCGGTCAGATCGATCAGATCATTCTGAATCTTGCCGTCAACGCACGCG ACGCCATGCAGCGCGGCGGCACCCTGACCATCGAAACCTCCAACCTCGAGCTATCCGAGAGCGAGGCCAGAAAGCTGGAC ACGACGCCGGGCCAGTATACCTCGCTATCCTTGAGCGACACCGGCCACGGTATGGATGAAGAAACCCGGCGCCACATTTT CGAGCCTTTCTTCACCACCAAGGAAGTCGGCCGCGGCACCGGCCTCGGGCTATCAACCGTATGGGGGATCGTCAAGCAGA GCGGTGGCTTTATTCGCGTAACCAGCGAACCCGGAAAGGGCAGCCGCTTCGCAATCTGCCTGCCCCGCGCGGCCGGCCGC GCTGCCGCCGCCCCGCACCCGGACTCCGCCGGAGTTCCACAGGCGGCCGGCGCCACCATCCTGCTACTCGAAGATGACAC CACCGTGCAACACCTGGTGAGCACCATGCTGAAGAGCGCCGGTTACCGCGTGCTCCCCGCTTCAACACCGTCCGAGGCGC TGACCATCTGCGCGAACTTCACCGTCCACATCGATCTTCTGCTCACCGACATGGTCCTCCCCGAAGACGACGGCGCCTCA GTCGCCGAACAGGCCGTGGTCCTCCGCCCCAGCCTGAAAATCATGTTCATGTCCGGCTACACCGAACACCCCGTGCTCCA GCGCCCGTCTTTCAACCGCTCCGTCCCCTTCCTGCAAAAGCCTTTTACCAAGGCCCAGCTCACTTCGAAGGTCCGTGAAG CCTTGCAGTGA
Upstream 100 bases:
>100_bases GGCAAACAGGGCAGCCCCCGGATATTTCCACAGTGCCTTTCTCATGGAAATCCCCAGAGTAACAAACCCCACACTCCTGT TACGCTTGGATTGGGTACTT
Downstream 100 bases:
>100_bases AACCCGTTTTCTTGGCGTTACTTTGCGGCTTTGCGTCTTTGCGAGATAGCGGCCTTTCTCGCAGAGACGCAGAGTAACGC AAAGAAAAGTCCACTGCACT
Product: PAS/PAC sensor hybrid histidine kinase
Products: NA
Alternate protein names: Blue-light-activated histidine kinase; Response regulator [H]
Number of amino acids: Translated: 856; Mature: 856
Protein sequence:
>856_residues MDRLRRKNLLASHNLWLTVAITIVIAIAVYSKMDAEAFREAADRATRSRAVMETSQRLFSLLRDADSGHRSYLLTGDSRY LAAYNGTLPKLQDAMRDLTGATGPAAPELTRFAAIIHAKLDELAQGIRIRQQGDAAAAMEIVRSDRGRQSMDELRAFSAQ IVQNEYPRLEGWRASAMHHGYQTRVLVQVGALGLALMLFFANRRINHLLHSQQKLIEDLDASRERESRDRAALATTLRSI GDAVITTDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLREGALVGPANHTILVARDGRE IPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDSESRYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSR EEFLSMTLRDIRPPEDVPALIADTHIPTTEAHTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQ LRQAQKLEAVGQLAGGIAHDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQRAASLTRQLLAFSRRQVLQPVRL SLNANVASTQRMLSRLLGEDIQIKIQAAENLWDVWADPGQIDQIILNLAVNARDAMQRGGTLTIETSNLELSESEARKLD TTPGQYTSLSLSDTGHGMDEETRRHIFEPFFTTKEVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLPRAAGR AAAAPHPDSAGVPQAAGATILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANFTVHIDLLLTDMVLPEDDGAS VAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQKPFTKAQLTSKVREALQ
Sequences:
>Translated_856_residues MDRLRRKNLLASHNLWLTVAITIVIAIAVYSKMDAEAFREAADRATRSRAVMETSQRLFSLLRDADSGHRSYLLTGDSRY LAAYNGTLPKLQDAMRDLTGATGPAAPELTRFAAIIHAKLDELAQGIRIRQQGDAAAAMEIVRSDRGRQSMDELRAFSAQ IVQNEYPRLEGWRASAMHHGYQTRVLVQVGALGLALMLFFANRRINHLLHSQQKLIEDLDASRERESRDRAALATTLRSI GDAVITTDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLREGALVGPANHTILVARDGRE IPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDSESRYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSR EEFLSMTLRDIRPPEDVPALIADTHIPTTEAHTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQ LRQAQKLEAVGQLAGGIAHDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQRAASLTRQLLAFSRRQVLQPVRL SLNANVASTQRMLSRLLGEDIQIKIQAAENLWDVWADPGQIDQIILNLAVNARDAMQRGGTLTIETSNLELSESEARKLD TTPGQYTSLSLSDTGHGMDEETRRHIFEPFFTTKEVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLPRAAGR AAAAPHPDSAGVPQAAGATILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANFTVHIDLLLTDMVLPEDDGAS VAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQKPFTKAQLTSKVREALQ >Mature_856_residues MDRLRRKNLLASHNLWLTVAITIVIAIAVYSKMDAEAFREAADRATRSRAVMETSQRLFSLLRDADSGHRSYLLTGDSRY LAAYNGTLPKLQDAMRDLTGATGPAAPELTRFAAIIHAKLDELAQGIRIRQQGDAAAAMEIVRSDRGRQSMDELRAFSAQ IVQNEYPRLEGWRASAMHHGYQTRVLVQVGALGLALMLFFANRRINHLLHSQQKLIEDLDASRERESRDRAALATTLRSI GDAVITTDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLREGALVGPANHTILVARDGRE IPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDSESRYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSR EEFLSMTLRDIRPPEDVPALIADTHIPTTEAHTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQ LRQAQKLEAVGQLAGGIAHDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQRAASLTRQLLAFSRRQVLQPVRL SLNANVASTQRMLSRLLGEDIQIKIQAAENLWDVWADPGQIDQIILNLAVNARDAMQRGGTLTIETSNLELSESEARKLD TTPGQYTSLSLSDTGHGMDEETRRHIFEPFFTTKEVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLPRAAGR AAAAPHPDSAGVPQAAGATILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANFTVHIDLLLTDMVLPEDDGAS VAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQKPFTKAQLTSKVREALQ
Specific function: Photosensitive kinase and response regulator that is involved in increased bacterial virulence upon exposure to light [H]
COG id: COG0642
COG function: function code T; Signal transduction histidine kinase
Gene ontology:
Cell location: Integral Membrane Protein. Inner Membrane [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 response regulatory domain [H]
Homologues:
Organism=Escherichia coli, GI1788549, Length=334, Percent_Identity=31.7365269461078, Blast_Score=123, Evalue=6e-29, Organism=Escherichia coli, GI1790436, Length=244, Percent_Identity=31.5573770491803, Blast_Score=115, Evalue=9e-27, Organism=Escherichia coli, GI87081816, Length=347, Percent_Identity=26.8011527377522, Blast_Score=87, Evalue=4e-18, Organism=Escherichia coli, GI1788713, Length=496, Percent_Identity=23.5887096774194, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI48994928, Length=485, Percent_Identity=24.3298969072165, Blast_Score=72, Evalue=1e-13, Organism=Escherichia coli, GI145693157, Length=338, Percent_Identity=22.7810650887574, Blast_Score=71, Evalue=4e-13, Organism=Escherichia coli, GI1790300, Length=280, Percent_Identity=27.5, Blast_Score=69, Evalue=9e-13,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR003594 - InterPro: IPR011006 - InterPro: IPR001610 - InterPro: IPR000014 - InterPro: IPR000700 - InterPro: IPR013767 - InterPro: IPR004358 - InterPro: IPR003661 - InterPro: IPR005467 - InterPro: IPR009082 - InterPro: IPR001789 [H]
Pfam domain/function: PF02518 HATPase_c; PF00512 HisKA; PF00989 PAS; PF00072 Response_reg [H]
EC number: =2.7.13.3 [H]
Molecular weight: Translated: 94062; Mature: 94062
Theoretical pI: Translated: 6.45; Mature: 6.45
Prosite motif: PS50112 PAS ; PS50113 PAC ; PS50110 RESPONSE_REGULATORY ; PS50109 HIS_KIN
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.2 %Met (Mature Protein) 2.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDRLRRKNLLASHNLWLTVAITIVIAIAVYSKMDAEAFREAADRATRSRAVMETSQRLFS CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LLRDADSGHRSYLLTGDSRYLAAYNGTLPKLQDAMRDLTGATGPAAPELTRFAAIIHAKL HHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH DELAQGIRIRQQGDAAAAMEIVRSDRGRQSMDELRAFSAQIVQNEYPRLEGWRASAMHHG HHHHHCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC YQTRVLVQVGALGLALMLFFANRRINHLLHSQQKLIEDLDASRERESRDRAALATTLRSI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GDAVITTDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLR CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHCCCHHHHHHHHHH EGALVGPANHTILVARDGREIPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDS CCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCC ESRYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSREEFLSMTLRDIRPPEDVPAL CCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHH IADTHIPTTEAHTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQ HCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCEEEEEEECCHHHCCHHHH LRQAQKLEAVGQLAGGIAHDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH SLTRQLLAFSRRQVLQPVRLSLNANVASTQRMLSRLLGEDIQIKIQAAENLWDVWADPGQ HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCH IDQIILNLAVNARDAMQRGGTLTIETSNLELSESEARKLDTTPGQYTSLSLSDTGHGMDE HHHHHHHHHCCHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCH ETRRHIFEPFFTTKEVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLPRAAGR HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCC AAAAPHPDSAGVPQAAGATILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANF CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCHHHEEEEECC TVHIDLLLTDMVLPEDDGASVAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQK EEEEEEEEHHHCCCCCCCCHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHC PFTKAQLTSKVREALQ CCHHHHHHHHHHHHCC >Mature Secondary Structure MDRLRRKNLLASHNLWLTVAITIVIAIAVYSKMDAEAFREAADRATRSRAVMETSQRLFS CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH LLRDADSGHRSYLLTGDSRYLAAYNGTLPKLQDAMRDLTGATGPAAPELTRFAAIIHAKL HHHCCCCCCCEEEEECCCEEEEEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH DELAQGIRIRQQGDAAAAMEIVRSDRGRQSMDELRAFSAQIVQNEYPRLEGWRASAMHHG HHHHHCCEEECCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCC YQTRVLVQVGALGLALMLFFANRRINHLLHSQQKLIEDLDASRERESRDRAALATTLRSI CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GDAVITTDGQGRVQFVNAVAEALTGWTAGDAEGRPLPDVFRAEDEATRRPAEDLTARVLR CCEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHCCCCHHHCCCHHHHHHHHHH EGALVGPANHTILVARDGREIPIDDSAAPIHDEQGNIAGVVLVFRDVTLRRRAQRHLEDS CCCEECCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEEEEEEHHHHHHHHHHHHHCCCC ESRYRLLFESNPSPMWVYDTATLAFLAVNAAATAHYGYSREEFLSMTLRDIRPPEDVPAL CCEEEEEEECCCCCEEEECHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCHH IADTHIPTTEAHTDGPWRHRKKDGSVIFVEITAHPICFGGANAVLVMATDITERRGLEEQ HCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCEEEECCCCEEEEEEECCHHHCCHHHH LRQAQKLEAVGQLAGGIAHDFNNLLTVIEGYAEMIRADQAADDPQREPLDEILVAAQRAA HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHH SLTRQLLAFSRRQVLQPVRLSLNANVASTQRMLSRLLGEDIQIKIQAAENLWDVWADPGQ HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCEEEEEEEHHHHHHHCCCCCH IDQIILNLAVNARDAMQRGGTLTIETSNLELSESEARKLDTTPGQYTSLSLSDTGHGMDE HHHHHHHHHCCHHHHHHCCCEEEEEECCCCCCHHHHHHCCCCCCCEEEEEECCCCCCCCH ETRRHIFEPFFTTKEVGRGTGLGLSTVWGIVKQSGGFIRVTSEPGKGSRFAICLPRAAGR HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCEEEEEECCCCCC AAAAPHPDSAGVPQAAGATILLLEDDTTVQHLVSTMLKSAGYRVLPASTPSEALTICANF CCCCCCCCCCCCCCCCCCEEEEEECCCHHHHHHHHHHHHCCCEEECCCCCHHHEEEEECC TVHIDLLLTDMVLPEDDGASVAEQAVVLRPSLKIMFMSGYTEHPVLQRPSFNRSVPFLQK EEEEEEEEHHHCCCCCCCCHHHHHHEEECCCEEEEEECCCCCCCCCCCCCCCCCCCHHHC PFTKAQLTSKVREALQ CCHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 6.0
TargetDB status: NA
Availability: NA
References: NA