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The map label for this gene is ygaU [H]

Identifier: 116623985

GI number: 116623985

Start: 6178637

End: 6179089

Strand: Reverse

Name: ygaU [H]

Synonym: Acid_4897

Alternate gene names: 116623985

Gene position: 6179089-6178637 (Counterclockwise)

Preceding gene: 116623989

Following gene: 116623982

Centisome position: 62.0

GC content: 53.64

Gene sequence:

>453_bases
ATGGCAAAAGACAGCCAGGCATTTGAACAAGCAAAACAAAAATATCAACCGGTCCTCACGCTGATGCAACAGCTTGGGGT
GCAAGTTCAAAACGTAAACATGGAAGGCAACAAGTTGTTGATTCGGGGTGTGGCGCCGTCGGCGGACATCAAGAATCGAA
TCTGGGATCAGGTCAAGTTGATCGATGCCAGTTATTCCGACCTGACTTGCGACCTGAGCGTATCGCAGGCGGCGTCCCAG
CAACCCGGGGCGACGATGACTGCGGGAGCGGCGGCCGGAGGAGGTCAAAATCAGCGGCACTACACGGTTAAGAGTGGAGA
TACGCTCTCCAAGATCAGCCGTGAATTCTACGGGGACGCGAATCAGTACACGAAGATCTTCAACGCAAATCGCAACATCC
TGCGCGATCCGAACACGATCAAGCCCGGCCAGGAATTGATCATTCCGGAGTAA

Upstream 100 bases:

>100_bases
AAAAACTGAATCGCTTCCGCCGAAAACTCATCACTTGCGCTCGTAAGGGTTCAGTTCAAGGGAATGAAGGAGCGGCACAT
TGTGCCGGAAGGAGTATTCT

Downstream 100 bases:

>100_bases
AACCTCGGGCTGCAATAAGATGCGGAGACAGCGCCAGGGCGCCGCCTCCGCATCGCGCGAAAATAAATCTTCCTCGTTAC
AGGGGCATCGAGCATAACAA

Product: peptidoglycan-binding LysM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 150; Mature: 149

Protein sequence:

>150_residues
MAKDSQAFEQAKQKYQPVLTLMQQLGVQVQNVNMEGNKLLIRGVAPSADIKNRIWDQVKLIDASYSDLTCDLSVSQAASQ
QPGATMTAGAAAGGGQNQRHYTVKSGDTLSKISREFYGDANQYTKIFNANRNILRDPNTIKPGQELIIPE

Sequences:

>Translated_150_residues
MAKDSQAFEQAKQKYQPVLTLMQQLGVQVQNVNMEGNKLLIRGVAPSADIKNRIWDQVKLIDASYSDLTCDLSVSQAASQ
QPGATMTAGAAAGGGQNQRHYTVKSGDTLSKISREFYGDANQYTKIFNANRNILRDPNTIKPGQELIIPE
>Mature_149_residues
AKDSQAFEQAKQKYQPVLTLMQQLGVQVQNVNMEGNKLLIRGVAPSADIKNRIWDQVKLIDASYSDLTCDLSVSQAASQQ
PGATMTAGAAAGGGQNQRHYTVKSGDTLSKISREFYGDANQYTKIFNANRNILRDPNTIKPGQELIIPE

Specific function: Unknown

COG id: COG1652

COG function: function code S; Uncharacterized protein containing LysM domain

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 LysM repeat [H]

Homologues:

Organism=Escherichia coli, GI1789019, Length=52, Percent_Identity=61.5384615384615, Blast_Score=70, Evalue=6e-14,

Paralogues:

None

Copy number: 4340 Molecules/Cell In: Early Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR018392
- InterPro:   IPR002482
- InterPro:   IPR007055
- InterPro:   IPR014004 [H]

Pfam domain/function: PF04972 BON; PF01476 LysM [H]

EC number: NA

Molecular weight: Translated: 16444; Mature: 16313

Theoretical pI: Translated: 9.00; Mature: 9.00

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKDSQAFEQAKQKYQPVLTLMQQLGVQVQNVNMEGNKLLIRGVAPSADIKNRIWDQVKL
CCCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHE
IDASYSDLTCDLSVSQAASQQPGATMTAGAAAGGGQNQRHYTVKSGDTLSKISREFYGDA
ECCCCCCEEECCCHHHHHCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCH
NQYTKIFNANRNILRDPNTIKPGQELIIPE
HHHHHHHCCCCCCCCCCCCCCCCCEECCCC
>Mature Secondary Structure 
AKDSQAFEQAKQKYQPVLTLMQQLGVQVQNVNMEGNKLLIRGVAPSADIKNRIWDQVKL
CCCHHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCEEEEEECCCCCHHHHHHHHHHHE
IDASYSDLTCDLSVSQAASQQPGATMTAGAAAGGGQNQRHYTVKSGDTLSKISREFYGDA
ECCCCCCEEECCCHHHHHCCCCCCEEECCCCCCCCCCCCEEEECCCCHHHHHHHHHCCCH
NQYTKIFNANRNILRDPNTIKPGQELIIPE
HHHHHHHCCCCCCCCCCCCCCCCCEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]