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The map label for this gene is 116623935

Identifier: 116623935

GI number: 116623935

Start: 6121739

End: 6123310

Strand: Reverse

Name: 116623935

Synonym: Acid_4847

Alternate gene names: NA

Gene position: 6123310-6121739 (Counterclockwise)

Preceding gene: 116623936

Following gene: 116623934

Centisome position: 61.44

GC content: 61.13

Gene sequence:

>1572_bases
ATGAACCGAATCGCGATCGTGTGCCTGTCAATCATCGCCGCGGCGCTCTGCCTCAACGCCGCCGTAGTCGATATCACCAC
CTTCGGTGCCAAGGGAGATGGCAAGACCCAGAACCGCGATGCCATCAATAAAGCCATCGAAACCGCAGCCGCGGCCGGAG
GCGGCACCGTTGAATTTCCGGCAGGTACGTGGCTCACGGGGTCCCTTCGCCTGCGCAGCAACGTCACCCTCCATCTCGAT
CGCGGCGCCGTTATCGAGGCGAGCTCCGACGCCTCCTCTTACGACGCTCCTGAACCCAATCAGTGGGATAAATTTCAGGA
CTTCGGACACAGCCATTTTCACAACAGCCTTATCTGGGGAGAAGGACTCGAAAACATCGCCATCACCGGAGGCGGCCGCA
TCTCCGGTAAGGCCCTGGCTCGCGAACGCGGCGCCGCGGGCGATAAGGCGATCGCCCTCAAGCTCTGTCACAACGTCACC
CTGCGCGACTTCTCCATCAGCACCGGCGGACACTTTGGAATCCTCGCCACCGGCATCGACAACCTGACCATCGACAACAT
CATGATCGATACCAACCGCGACGGTATCGATATCGATTCCTGCCGCAATGTCCGGATCTCGAATTCCAGCATCAACGCAC
CCAACGACGACGCCATCACGCTAAAGGGCTCGCATGCCCTCGGCGAGCCGCGCGTCAGCGAGAACATCACCATCACGAAT
TCCCTGGTCAGCGGCTTTGAAATCGGCTCCCTGCTCGATGGCACCTACAAACGCACCGTGCAGCGCGCGCCCGACCGCGA
TGGACCCACCGGACGCATCAAGATCGGCACCGAATCCGAAGGAGATTTCCGCAACATCACGATCTCTAACGTCGTCTTCG
ACACTTCCCGCGGTCTTGCCCTGGAGAGCGTCGATGGAGCCCACATCGAAGACGTTGCCGTTTCCAATCTCACCATGCGC
AACGTGTCGAACGCGCCCATCTTCCTCCGCCTCCGCAGCCGCATGCGCGCTCCCGAAGGCACTCCGATCGGCTCCATCAA
ACGCATCACCATCAGCAACGTGATTGCCTACGATGCTGATCCGCGCTACGCATCCATCATCGCCGGCGTGCCCGGCCACG
ATGTCGAAGATGTGAAGCTGAGCGGCATCCGCCTGGTGTATCGCGGCGGCCTGACCCTCGACGACACGGCGAAGCAGCCT
GCCGGCCTGGTAAACTCATTTTTCTTCCGCGCCTCCGGCGGCGTCCCGCCCCGGGAACCCTACGAAACGCCCGAGCGCGA
GAAGGAGTATCCCGAACCCTCCATGTTCGGCATCCTGCCCGCGTATGGCTTTTTCATCCGTCACGCCGCCGGCATTCAAC
TCAACGATATCGATGTCAGCTACATCAAGGAGGATCGCCGCCCCGCCTTCGTCCTCGATAGCGTCGATGGCGTCACGCTC
GAAAATTGCAAAGCTCGAAGGACCGCGACCGTCCCGACCCTGGTGATGATGAACGCCAAAGCCGTCGAAGCCCGCCATTG
CGCCGGTCTCCCCGACTTCCGGACTGACAGCGCAGCTCGCAAAGAGATGTAG

Upstream 100 bases:

>100_bases
CGCCTTTCATGAAGGAGCCGCCAATGGTTTGGAAAAATGATTGCCCGGCAATTTCTTATCTGCGTTCATCTGTGGCCCAT
GTTGCCTATTTGGAGATCGA

Downstream 100 bases:

>100_bases
CCGCCGGTATATGATGTACGGCAAGTGATCCCTCGGAAGGGCAATTGGAAAGGATGGTCAACGATGAGATTCTCATCCAC
GTTATGTTTGGTTCTATCCG

Product: glycoside hydrolase family protein

Products: NA

Alternate protein names: Polygalacturonase; Glycoside Hydrolase Family Protein; Exo-Poly-Alpha-D-Galacturonosidase; Galacturan 1 4-Alpha-Galacturonidase; Pectate Lyase; Endopolygalacturonase; Glycoside Hydrolase; Pectin Lyase Fold Domain Protein Virulence Factor; Endo-Polygalacturonase; Polygalacturonase Family Protein; Polygalacturonase/Beta-Xylosidase; Endopygalactorunase

Number of amino acids: Translated: 523; Mature: 523

Protein sequence:

>523_residues
MNRIAIVCLSIIAAALCLNAAVVDITTFGAKGDGKTQNRDAINKAIETAAAAGGGTVEFPAGTWLTGSLRLRSNVTLHLD
RGAVIEASSDASSYDAPEPNQWDKFQDFGHSHFHNSLIWGEGLENIAITGGGRISGKALARERGAAGDKAIALKLCHNVT
LRDFSISTGGHFGILATGIDNLTIDNIMIDTNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITN
SLVSGFEIGSLLDGTYKRTVQRAPDRDGPTGRIKIGTESEGDFRNITISNVVFDTSRGLALESVDGAHIEDVAVSNLTMR
NVSNAPIFLRLRSRMRAPEGTPIGSIKRITISNVIAYDADPRYASIIAGVPGHDVEDVKLSGIRLVYRGGLTLDDTAKQP
AGLVNSFFFRASGGVPPREPYETPEREKEYPEPSMFGILPAYGFFIRHAAGIQLNDIDVSYIKEDRRPAFVLDSVDGVTL
ENCKARRTATVPTLVMMNAKAVEARHCAGLPDFRTDSAARKEM

Sequences:

>Translated_523_residues
MNRIAIVCLSIIAAALCLNAAVVDITTFGAKGDGKTQNRDAINKAIETAAAAGGGTVEFPAGTWLTGSLRLRSNVTLHLD
RGAVIEASSDASSYDAPEPNQWDKFQDFGHSHFHNSLIWGEGLENIAITGGGRISGKALARERGAAGDKAIALKLCHNVT
LRDFSISTGGHFGILATGIDNLTIDNIMIDTNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITN
SLVSGFEIGSLLDGTYKRTVQRAPDRDGPTGRIKIGTESEGDFRNITISNVVFDTSRGLALESVDGAHIEDVAVSNLTMR
NVSNAPIFLRLRSRMRAPEGTPIGSIKRITISNVIAYDADPRYASIIAGVPGHDVEDVKLSGIRLVYRGGLTLDDTAKQP
AGLVNSFFFRASGGVPPREPYETPEREKEYPEPSMFGILPAYGFFIRHAAGIQLNDIDVSYIKEDRRPAFVLDSVDGVTL
ENCKARRTATVPTLVMMNAKAVEARHCAGLPDFRTDSAARKEM
>Mature_523_residues
MNRIAIVCLSIIAAALCLNAAVVDITTFGAKGDGKTQNRDAINKAIETAAAAGGGTVEFPAGTWLTGSLRLRSNVTLHLD
RGAVIEASSDASSYDAPEPNQWDKFQDFGHSHFHNSLIWGEGLENIAITGGGRISGKALARERGAAGDKAIALKLCHNVT
LRDFSISTGGHFGILATGIDNLTIDNIMIDTNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITN
SLVSGFEIGSLLDGTYKRTVQRAPDRDGPTGRIKIGTESEGDFRNITISNVVFDTSRGLALESVDGAHIEDVAVSNLTMR
NVSNAPIFLRLRSRMRAPEGTPIGSIKRITISNVIAYDADPRYASIIAGVPGHDVEDVKLSGIRLVYRGGLTLDDTAKQP
AGLVNSFFFRASGGVPPREPYETPEREKEYPEPSMFGILPAYGFFIRHAAGIQLNDIDVSYIKEDRRPAFVLDSVDGVTL
ENCKARRTATVPTLVMMNAKAVEARHCAGLPDFRTDSAARKEM

Specific function: Unknown

COG id: COG5434

COG function: function code M; Endopolygalacturonase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 56191; Mature: 56191

Theoretical pI: Translated: 6.30; Mature: 6.30

Prosite motif: PS00449 ATPASE_A

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRIAIVCLSIIAAALCLNAAVVDITTFGAKGDGKTQNRDAINKAIETAAAAGGGTVEFP
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
AGTWLTGSLRLRSNVTLHLDRGAVIEASSDASSYDAPEPNQWDKFQDFGHSHFHNSLIWG
CCCEEEEEEEEECCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCEEEC
EGLENIAITGGGRISGKALARERGAAGDKAIALKLCHNVTLRDFSISTGGHFGILATGID
CCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
NLTIDNIMIDTNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITN
CEEEEEEEEECCCCCCCHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEH
SLVSGFEIGSLLDGTYKRTVQRAPDRDGPTGRIKIGTESEGDFRNITISNVVFDTSRGLA
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEECCCCEE
LESVDGAHIEDVAVSNLTMRNVSNAPIFLRLRSRMRAPEGTPIGSIKRITISNVIAYDAD
EECCCCCCCCCEECCCEEEECCCCCCEEEEEHHHHCCCCCCCCCCEEEEEEEEEEEECCC
PRYASIIAGVPGHDVEDVKLSGIRLVYRGGLTLDDTAKQPAGLVNSFFFRASGGVPPREP
CCEEEEEECCCCCCCCCEEECCEEEEEECCCEECCCCCCCHHHHHHHHHEECCCCCCCCC
YETPEREKEYPEPSMFGILPAYGFFIRHAAGIQLNDIDVSYIKEDRRPAFVLDSVDGVTL
CCCCCHHHCCCCCCCEEHHHHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEECCCCCCC
ENCKARRTATVPTLVMMNAKAVEARHCAGLPDFRTDSAARKEM
CCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHCC
>Mature Secondary Structure
MNRIAIVCLSIIAAALCLNAAVVDITTFGAKGDGKTQNRDAINKAIETAAAAGGGTVEFP
CCHHHHHHHHHHHHHHHHCCEEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEC
AGTWLTGSLRLRSNVTLHLDRGAVIEASSDASSYDAPEPNQWDKFQDFGHSHFHNSLIWG
CCCEEEEEEEEECCEEEEECCCEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHCCEEEC
EGLENIAITGGGRISGKALARERGAAGDKAIALKLCHNVTLRDFSISTGGHFGILATGID
CCCCEEEEECCCCCCCHHHHHHCCCCCCCEEEEEECCCCEEEEEEECCCCCEEEEEECCC
NLTIDNIMIDTNRDGIDIDSCRNVRISNSSINAPNDDAITLKGSHALGEPRVSENITITN
CEEEEEEEEECCCCCCCHHCCCCEEEECCCCCCCCCCEEEEECCCCCCCCCCCCCEEEEH
SLVSGFEIGSLLDGTYKRTVQRAPDRDGPTGRIKIGTESEGDFRNITISNVVFDTSRGLA
HHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCCCCCEEEEEEEEEEEECCCCEE
LESVDGAHIEDVAVSNLTMRNVSNAPIFLRLRSRMRAPEGTPIGSIKRITISNVIAYDAD
EECCCCCCCCCEECCCEEEECCCCCCEEEEEHHHHCCCCCCCCCCEEEEEEEEEEEECCC
PRYASIIAGVPGHDVEDVKLSGIRLVYRGGLTLDDTAKQPAGLVNSFFFRASGGVPPREP
CCEEEEEECCCCCCCCCEEECCEEEEEECCCEECCCCCCCHHHHHHHHHEECCCCCCCCC
YETPEREKEYPEPSMFGILPAYGFFIRHAAGIQLNDIDVSYIKEDRRPAFVLDSVDGVTL
CCCCCHHHCCCCCCCEEHHHHHHHHHHHHCCCEEECCCHHHHHCCCCCEEEEECCCCCCC
ENCKARRTATVPTLVMMNAKAVEARHCAGLPDFRTDSAARKEM
CCCCCCCCCCCCEEEEECCHHHHHHHHCCCCCCCCCCHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA