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The map label for this gene is rhmA [H]

Identifier: 116623934

GI number: 116623934

Start: 6120794

End: 6121675

Strand: Reverse

Name: rhmA [H]

Synonym: Acid_4846

Alternate gene names: 116623934

Gene position: 6121675-6120794 (Counterclockwise)

Preceding gene: 116623935

Following gene: 116623932

Centisome position: 61.43

GC content: 59.18

Gene sequence:

>882_bases
ATGAGATTCTCATCCACGTTATGTTTGGTTCTATCCGGCTCCTTGCTGGGAATTCCGGCCCTGGCACAACCGGCGTCAAA
CTCGCCGCTGTACAACACGGTGATTCAGAAGCTTCGGGAAGGGAAGCAGGTCTTCAGTTTCACCCAGGTCAAGAACGACC
CTCAAGCCTACTGCGAAGCAGCCAAACATTACGACTACACCTGGTTCGAGATGCAGCACAGCACCCTGGAGTTTAGAGAC
GTGGAGGCCATGATCGCAGCCTGCCCGCACGTCCGCGCGATTCCCATGATCCGCCTTCCGGACGCGCAGGAATGGCACAT
CCAGCACGCCACCGATATCGGCGCCCTGGGCGTCATCATTCCCACGGTCGATGATGTCGATCGCGCGCGTGAAGCCGCCA
AGTGGTCCCGCTATCCGCCGGTGGCCCGCCGCAGTTCCGGCAACGGACAGGCCCGGTCACTGTGGGGGAGCAACGCTGCC
AACTATGCCAAGACTTTCAATGACAACATGCTCGTCGTGGTGATGATCGAAACGCCCACCGGCGTGGCTAACGCCTATGA
CATCGCCTCCGTTCCCGGCATCGACATTGTGATCATCGGCAACAACGACCTCAGCGTCTTCTCCGGATTTGCTCAAGACG
ACGACCGCTATCAGGCAATGATCAGGAAAGTTCACGACGACACCTTGCGCGCAGGCAAGATCTTCGGCCAGGCCAATGCC
ATTTATGCTACCGGCCACCCGCTCAGCAAGGATGCCAAATTTTTCCAGAACGGCCCCGCGTTCGATGGCTGGAAACCCGC
CGGCGTTAGCAACACCAGCGCCCCTCCGCCGGGCGAGGAAGACGCGCCCGGAAAAAAGCCGCCAACCAAAAAGGACAAGT
GA

Upstream 100 bases:

>100_bases
CTTCCGGACTGACAGCGCAGCTCGCAAAGAGATGTAGCCGCCGGTATATGATGTACGGCAAGTGATCCCTCGGAAGGGCA
ATTGGAAAGGATGGTCAACG

Downstream 100 bases:

>100_bases
GCCCTTACGGCCCGACTTCGAAGATGACTTCCAGTTCGACCGGTACGCCGAGCGGCAAGCTTGCCACTCCGTAGACCATC
CGGCTAGGATTCTTTTCTTT

Product: HpcH/HpaI aldolase

Products: NA

Alternate protein names: KDR aldolase; 2-dehydro-3-deoxyrhamnonate aldolase [H]

Number of amino acids: Translated: 293; Mature: 293

Protein sequence:

>293_residues
MRFSSTLCLVLSGSLLGIPALAQPASNSPLYNTVIQKLREGKQVFSFTQVKNDPQAYCEAAKHYDYTWFEMQHSTLEFRD
VEAMIAACPHVRAIPMIRLPDAQEWHIQHATDIGALGVIIPTVDDVDRAREAAKWSRYPPVARRSSGNGQARSLWGSNAA
NYAKTFNDNMLVVVMIETPTGVANAYDIASVPGIDIVIIGNNDLSVFSGFAQDDDRYQAMIRKVHDDTLRAGKIFGQANA
IYATGHPLSKDAKFFQNGPAFDGWKPAGVSNTSAPPPGEEDAPGKKPPTKKDK

Sequences:

>Translated_293_residues
MRFSSTLCLVLSGSLLGIPALAQPASNSPLYNTVIQKLREGKQVFSFTQVKNDPQAYCEAAKHYDYTWFEMQHSTLEFRD
VEAMIAACPHVRAIPMIRLPDAQEWHIQHATDIGALGVIIPTVDDVDRAREAAKWSRYPPVARRSSGNGQARSLWGSNAA
NYAKTFNDNMLVVVMIETPTGVANAYDIASVPGIDIVIIGNNDLSVFSGFAQDDDRYQAMIRKVHDDTLRAGKIFGQANA
IYATGHPLSKDAKFFQNGPAFDGWKPAGVSNTSAPPPGEEDAPGKKPPTKKDK
>Mature_293_residues
MRFSSTLCLVLSGSLLGIPALAQPASNSPLYNTVIQKLREGKQVFSFTQVKNDPQAYCEAAKHYDYTWFEMQHSTLEFRD
VEAMIAACPHVRAIPMIRLPDAQEWHIQHATDIGALGVIIPTVDDVDRAREAAKWSRYPPVARRSSGNGQARSLWGSNAA
NYAKTFNDNMLVVVMIETPTGVANAYDIASVPGIDIVIIGNNDLSVFSGFAQDDDRYQAMIRKVHDDTLRAGKIFGQANA
IYATGHPLSKDAKFFQNGPAFDGWKPAGVSNTSAPPPGEEDAPGKKPPTKKDK

Specific function: Catalyzes the reversible retro-aldol cleavage of 2-keto- 3-deoxy-L-rhamnonate (KDR) to pyruvate and lactaldehyde [H]

COG id: COG3836

COG function: function code G; 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HpcH/HpaI aldolase family. KDR aldolase subfamily [H]

Homologues:

Organism=Escherichia coli, GI1788578, Length=219, Percent_Identity=27.8538812785388, Blast_Score=91, Evalue=9e-20,
Organism=Escherichia coli, GI1789514, Length=146, Percent_Identity=26.7123287671233, Blast_Score=64, Evalue=8e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005000
- InterPro:   IPR015813 [H]

Pfam domain/function: PF03328 HpcH_HpaI [H]

EC number: NA

Molecular weight: Translated: 32049; Mature: 32049

Theoretical pI: Translated: 7.20; Mature: 7.20

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.4 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRFSSTLCLVLSGSLLGIPALAQPASNSPLYNTVIQKLREGKQVFSFTQVKNDPQAYCEA
CCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AKHYDYTWFEMQHSTLEFRDVEAMIAACPHVRAIPMIRLPDAQEWHIQHATDIGALGVII
HHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEECCCCCCEEEEEE
PTVDDVDRAREAAKWSRYPPVARRSSGNGQARSLWGSNAANYAKTFNDNMLVVVMIETPT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCEEEEEEEECCC
GVANAYDIASVPGIDIVIIGNNDLSVFSGFAQDDDRYQAMIRKVHDDTLRAGKIFGQANA
CCCCCCHHCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
IYATGHPLSKDAKFFQNGPAFDGWKPAGVSNTSAPPPGEEDAPGKKPPTKKDK
EEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
>Mature Secondary Structure
MRFSSTLCLVLSGSLLGIPALAQPASNSPLYNTVIQKLREGKQVFSFTQVKNDPQAYCEA
CCCCCEEEEEECCCHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
AKHYDYTWFEMQHSTLEFRDVEAMIAACPHVRAIPMIRLPDAQEWHIQHATDIGALGVII
HHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCEEEECCCCCCEEEEEE
PTVDDVDRAREAAKWSRYPPVARRSSGNGQARSLWGSNAANYAKTFNDNMLVVVMIETPT
CCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCEECCCCCHHHHHHCCCCEEEEEEEECCC
GVANAYDIASVPGIDIVIIGNNDLSVFSGFAQDDDRYQAMIRKVHDDTLRAGKIFGQANA
CCCCCCHHCCCCCEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCE
IYATGHPLSKDAKFFQNGPAFDGWKPAGVSNTSAPPPGEEDAPGKKPPTKKDK
EEECCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA