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The map label for this gene is yjbJ [H]

Identifier: 116623910

GI number: 116623910

Start: 6093422

End: 6093985

Strand: Direct

Name: yjbJ [H]

Synonym: Acid_4822

Alternate gene names: 116623910

Gene position: 6093422-6093985 (Clockwise)

Preceding gene: 116623909

Following gene: 116623912

Centisome position: 61.14

GC content: 59.93

Gene sequence:

>564_bases
GTGACCGGCCTCATCGCATTCTTCTTCCTCGCCGCGGACAAACCGCCCGAGACCTTTCAATCCGCGATGGAAAAGCAGCG
GGCCGCTGCGGCGATTCAGCGCGAGTCCGTACGCAAGCAGGTCGAACTGGCGGCTCAGTGGCACGGCGCCTCGATGGACG
CCCCTGGTTGCGACGCCCTGCCGGAAATCGAGCTGACTCCGCTGATTGATGGCGCGGCGCAGGGCAACCAGGTGGAGTCC
AGGTTGTTGCGGGGCGTGATCGACCAGGAATCCGGAAAGCGACCCTGCGCGGTCTCTTCCAAGGGCGCCAAGGGACTGAT
GCAGCTTATGCCGGCGACTGCTGAGCAGTTCCATGTGGACGACCCGTTCGACGCCAAAGAGAATATCGAGGCAGGCGCCA
AATATCTTAAAGAGCTGCTTGAACGTTATAAGGGCGACGTCAAACTCGCCCTCGCCGCCTACAACGCCGGTCCCGCGGCC
GTGGACCAGGCGGGCGCGGTTCCCGATATTAAAGAAACTCAGGAATATGTGGAGGCTATATTGAAGAAAATAAAACCAAA
TTAG

Upstream 100 bases:

>100_bases
AGATGCTGCACCTGCTGCTGGCCGATGCACTGTGGATCTCGCTGGTACTTTTATGTGCCGGGATCCTAGAGTCCGAGCCG
ATCCTGACCGATAAGCCGGT

Downstream 100 bases:

>100_bases
TGGGACGGTCAAGGGCCTGTCCTACGCCGCCTGACCGGCGGCTACGCCGCTCGCCCAAGCCCACTGGAAGTTGAAGCCGC
CGAGGTGTCCGGTGACATCC

Product: lytic transglycosylase catalytic subunit subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 187; Mature: 186

Protein sequence:

>187_residues
MTGLIAFFFLAADKPPETFQSAMEKQRAAAAIQRESVRKQVELAAQWHGASMDAPGCDALPEIELTPLIDGAAQGNQVES
RLLRGVIDQESGKRPCAVSSKGAKGLMQLMPATAEQFHVDDPFDAKENIEAGAKYLKELLERYKGDVKLALAAYNAGPAA
VDQAGAVPDIKETQEYVEAILKKIKPN

Sequences:

>Translated_187_residues
MTGLIAFFFLAADKPPETFQSAMEKQRAAAAIQRESVRKQVELAAQWHGASMDAPGCDALPEIELTPLIDGAAQGNQVES
RLLRGVIDQESGKRPCAVSSKGAKGLMQLMPATAEQFHVDDPFDAKENIEAGAKYLKELLERYKGDVKLALAAYNAGPAA
VDQAGAVPDIKETQEYVEAILKKIKPN
>Mature_186_residues
TGLIAFFFLAADKPPETFQSAMEKQRAAAAIQRESVRKQVELAAQWHGASMDAPGCDALPEIELTPLIDGAAQGNQVESR
LLRGVIDQESGKRPCAVSSKGAKGLMQLMPATAEQFHVDDPFDAKENIEAGAKYLKELLERYKGDVKLALAAYNAGPAAV
DQAGAVPDIKETQEYVEAILKKIKPN

Specific function: Unknown

COG id: COG0741

COG function: function code M; Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the transglycosylase slt family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR008258
- InterPro:   IPR000189 [H]

Pfam domain/function: PF01464 SLT [H]

EC number: NA

Molecular weight: Translated: 20167; Mature: 20036

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: PS00922 TRANSGLYCOSYLASE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGLIAFFFLAADKPPETFQSAMEKQRAAAAIQRESVRKQVELAAQWHGASMDAPGCDAL
CHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PEIELTPLIDGAAQGNQVESRLLRGVIDQESGKRPCAVSSKGAKGLMQLMPATAEQFHVD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
DPFDAKENIEAGAKYLKELLERYKGDVKLALAAYNAGPAAVDQAGAVPDIKETQEYVEAI
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHH
LKKIKPN
HHHHCCC
>Mature Secondary Structure 
TGLIAFFFLAADKPPETFQSAMEKQRAAAAIQRESVRKQVELAAQWHGASMDAPGCDAL
HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
PEIELTPLIDGAAQGNQVESRLLRGVIDQESGKRPCAVSSKGAKGLMQLMPATAEQFHVD
CCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC
DPFDAKENIEAGAKYLKELLERYKGDVKLALAAYNAGPAAVDQAGAVPDIKETQEYVEAI
CCCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCHHHHHCCCCCCHHHHHHHHHHH
LKKIKPN
HHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]