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The map label for this gene is ctaB [H]

Identifier: 116623909

GI number: 116623909

Start: 6092496

End: 6093425

Strand: Direct

Name: ctaB [H]

Synonym: Acid_4821

Alternate gene names: 116623909

Gene position: 6092496-6093425 (Clockwise)

Preceding gene: 116623906

Following gene: 116623910

Centisome position: 61.14

GC content: 66.77

Gene sequence:

>930_bases
TTGCAGACGATTTCCAACCGTTCGTTCGCTCGCTACGCCTGGGCGGTACTCGCGTTCAATGTTGGCGTGGTGCTTTGGGG
CGCTTACGTCCGCGCGGCCGGAGCCGGCGCCGGGTGCGGGCAGCACTGGCCGCTGTGCAACGGCGTGATTGTGCCGGTTG
CTCCCACGCTCAAGACGATCATCGAATTCACTCACCGGGTCACGAGCGGCATCGATCTGGCGCTGGTGGCGCTGCTCGTG
GCCTGGGCCTTCCGGGCATTTCCGCGGCTGCATCCGGTGCGGCTGGGCGCGGTGCTCTCCGCCATTTTCCTGATGACGGA
AGCACTGATCGGGGCCGCGCTGGTGTTGCTGGAGCACGTGGCTAAGAACCAGTCGTCGGCGCGCGGATATTCGCTCTCCC
TGCACCTGATCAACACGTTGACACTGCTCGCCTGCCTGACGCTGACCGCGTGGTGGGCGATGGGCAAGCCGCCGGTCCGG
GTGGCGGGACGTCCGGGCTGGATGGCCGCCGGCAGCCTGGTGCTGGTCATGATCCTCGGCGTCAGCGGCGCGATCGCCGC
GCTCGGAGATACGCTGTTTCCCGCGCGCTCGCTGGCCGAAGCCTTTGCGCAGGATTTCGACCCGGCCTCCAGCATCTTCG
TGCGTTTGCGCGTGCTTCACCCGATCATCGCCGCAATCGCCGGGACCTGGCTCGTGCTTTACGCGGTGGCGACCGCCGGA
CGCCGTGCCGACCTGCGGCCGCGCGCCTGGCTGCTGCTCGGACTGGTGGGAGCGCAAGTTGCCGCCGGCTCCGTCAATCT
GCTGCTGCGGGCGCCGGTATTCATGCAGATGCTGCACCTGCTGCTGGCCGATGCACTGTGGATCTCGCTGGTACTTTTAT
GTGCCGGGATCCTAGAGTCCGAGCCGATCCTGACCGATAAGCCGGTGTGA

Upstream 100 bases:

>100_bases
TTTTCATGGCTGGTTGCCGCGGCTCATTGCTGTAAAAGCAGCAGCATGTTGCAAAAGTAGCATCGATGCCGGCGCCTGTC
AATGGGGAATACAATGAAAG

Downstream 100 bases:

>100_bases
CCGGCCTCATCGCATTCTTCTTCCTCGCCGCGGACAAACCGCCCGAGACCTTTCAATCCGCGATGGAAAAGCAGCGGGCC
GCTGCGGCGATTCAGCGCGA

Product: cytochrome oxidase assembly

Products: NA

Alternate protein names: Heme B farnesyltransferase; Heme O synthase [H]

Number of amino acids: Translated: 309; Mature: 309

Protein sequence:

>309_residues
MQTISNRSFARYAWAVLAFNVGVVLWGAYVRAAGAGAGCGQHWPLCNGVIVPVAPTLKTIIEFTHRVTSGIDLALVALLV
AWAFRAFPRLHPVRLGAVLSAIFLMTEALIGAALVLLEHVAKNQSSARGYSLSLHLINTLTLLACLTLTAWWAMGKPPVR
VAGRPGWMAAGSLVLVMILGVSGAIAALGDTLFPARSLAEAFAQDFDPASSIFVRLRVLHPIIAAIAGTWLVLYAVATAG
RRADLRPRAWLLLGLVGAQVAAGSVNLLLRAPVFMQMLHLLLADALWISLVLLCAGILESEPILTDKPV

Sequences:

>Translated_309_residues
MQTISNRSFARYAWAVLAFNVGVVLWGAYVRAAGAGAGCGQHWPLCNGVIVPVAPTLKTIIEFTHRVTSGIDLALVALLV
AWAFRAFPRLHPVRLGAVLSAIFLMTEALIGAALVLLEHVAKNQSSARGYSLSLHLINTLTLLACLTLTAWWAMGKPPVR
VAGRPGWMAAGSLVLVMILGVSGAIAALGDTLFPARSLAEAFAQDFDPASSIFVRLRVLHPIIAAIAGTWLVLYAVATAG
RRADLRPRAWLLLGLVGAQVAAGSVNLLLRAPVFMQMLHLLLADALWISLVLLCAGILESEPILTDKPV
>Mature_309_residues
MQTISNRSFARYAWAVLAFNVGVVLWGAYVRAAGAGAGCGQHWPLCNGVIVPVAPTLKTIIEFTHRVTSGIDLALVALLV
AWAFRAFPRLHPVRLGAVLSAIFLMTEALIGAALVLLEHVAKNQSSARGYSLSLHLINTLTLLACLTLTAWWAMGKPPVR
VAGRPGWMAAGSLVLVMILGVSGAIAALGDTLFPARSLAEAFAQDFDPASSIFVRLRVLHPIIAAIAGTWLVLYAVATAG
RRADLRPRAWLLLGLVGAQVAAGSVNLLLRAPVFMQMLHLLLADALWISLVLLCAGILESEPILTDKPV

Specific function: Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group [H]

COG id: COG1612

COG function: function code O; Uncharacterized protein required for cytochrome oxidase assembly

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: In the C-terminal section; belongs to the ubiA prenyltransferase family. Protoheme IX farnesyltransferase subfamily [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003780
- InterPro:   IPR006369
- InterPro:   IPR000537 [H]

Pfam domain/function: PF02628 COX15-CtaA; PF01040 UbiA [H]

EC number: NA

Molecular weight: Translated: 32843; Mature: 32843

Theoretical pI: Translated: 10.43; Mature: 10.43

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQTISNRSFARYAWAVLAFNVGVVLWGAYVRAAGAGAGCGQHWPLCNGVIVPVAPTLKTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHH
IEFTHRVTSGIDLALVALLVAWAFRAFPRLHPVRLGAVLSAIFLMTEALIGAALVLLEHV
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKNQSSARGYSLSLHLINTLTLLACLTLTAWWAMGKPPVRVAGRPGWMAAGSLVLVMILG
HCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHH
VSGAIAALGDTLFPARSLAEAFAQDFDPASSIFVRLRVLHPIIAAIAGTWLVLYAVATAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RRADLRPRAWLLLGLVGAQVAAGSVNLLLRAPVFMQMLHLLLADALWISLVLLCAGILES
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPILTDKPV
CCCCCCCCC
>Mature Secondary Structure
MQTISNRSFARYAWAVLAFNVGVVLWGAYVRAAGAGAGCGQHWPLCNGVIVPVAPTLKTI
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHH
IEFTHRVTSGIDLALVALLVAWAFRAFPRLHPVRLGAVLSAIFLMTEALIGAALVLLEHV
HHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AKNQSSARGYSLSLHLINTLTLLACLTLTAWWAMGKPPVRVAGRPGWMAAGSLVLVMILG
HCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHHHHHHHHHH
VSGAIAALGDTLFPARSLAEAFAQDFDPASSIFVRLRVLHPIIAAIAGTWLVLYAVATAG
CCHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
RRADLRPRAWLLLGLVGAQVAAGSVNLLLRAPVFMQMLHLLLADALWISLVLLCAGILES
CCCCCCHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
EPILTDKPV
CCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: NA