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The map label for this gene is 116623895

Identifier: 116623895

GI number: 116623895

Start: 6078172

End: 6078843

Strand: Reverse

Name: 116623895

Synonym: Acid_4807

Alternate gene names: NA

Gene position: 6078843-6078172 (Counterclockwise)

Preceding gene: 116623896

Following gene: 116623894

Centisome position: 61.0

GC content: 57.89

Gene sequence:

>672_bases
ATGTTCCCGTTACGCGATACACAGCCGAGCTACTCCAGGCCGGTCGTCACGGTCCTGCTGATCGTGGTCAATCTGCTGGT
CTTTCTCTTTGAGATTTCGCTCGAATCGTTCGATCGCAACGCGTTTATCGCAGCCTATGGGCTGATCCCCGACCACTTCA
GCTACCTCACCCTGTTAACCTCCATGTTCCTGCATGGCGGGTGGATGCATGTGCTGGGCAACATGTGGTTCCTCTGGATT
TTCGGCGATAACATCGAAGACATTCTGGGCCCCGCGAAATATCTGATCTTCTATCTGCTCTGCGGCGCTGCGGCTGGCCT
CACGCAGGTGCTCTCCAACCCCTACTCGCGCATTCCCACGGTAGGCGCGAGCGGCGCCATCGCGGGTGTCATGGGCGCTT
ATCTCATCAAGTTTCCGCACGCGCGCATCTACTCTCTGGTGACGGTGATTTTCTTTTTCACCACGGTGGACGTTCCCGCC
TGGGTGATGCTGATTTACTGGTTCGCCATTCAGTTCTTCAACGGCGTGGGCACGATCGGCTACTCCCATGTATCGGAAGG
AGGGGGCGTGGCCTTCTTCGCGCATGTCGGCGGCTTCCTGGCGGGTGTGGTTCTCATCAACCTGATGGCGCCTCGCGAAC
GCTTTTCGCGGCGTCAGGATCTCTACTGGTAG

Upstream 100 bases:

>100_bases
CATCCGCGGCCTGGACGAAGTGCATGCCCTGATGGCTCGCGCCGAGCGCCGGTCCCACTCCGATTTCGCGGCCCGGGCGG
CCCGCCCCTCTTAAAACGCT

Downstream 100 bases:

>100_bases
ATGAAACCGCGGGTGACTCTCTACACGCGGGCGGGCTGCTGCCTCTGCGACGAGGCCAAGCACGTGATCTCGGAGGCCCA
CGCCCATGCCGATTTCGAAT

Product: rhomboid family protein

Products: NA

Alternate protein names: Integral Membrane Protein; Peptidase; Rhomboid-Like Protein; S54 Family Peptidase; Transmembrane Rhomboid Family Protein; Peptidase Protein; Rhomboid Family Transmembrane Protein; LOW QUALITY PROTEIN Integral Membrane Protein; Subfamily; Rhomboid Serine Protease; Rhomboid Family Membrane Protein; Membrane Associated Serine Protease; Integral Membrane Rhomboid Family Protein; Regulatory Proteins IclR

Number of amino acids: Translated: 223; Mature: 223

Protein sequence:

>223_residues
MFPLRDTQPSYSRPVVTVLLIVVNLLVFLFEISLESFDRNAFIAAYGLIPDHFSYLTLLTSMFLHGGWMHVLGNMWFLWI
FGDNIEDILGPAKYLIFYLLCGAAAGLTQVLSNPYSRIPTVGASGAIAGVMGAYLIKFPHARIYSLVTVIFFFTTVDVPA
WVMLIYWFAIQFFNGVGTIGYSHVSEGGGVAFFAHVGGFLAGVVLINLMAPRERFSRRQDLYW

Sequences:

>Translated_223_residues
MFPLRDTQPSYSRPVVTVLLIVVNLLVFLFEISLESFDRNAFIAAYGLIPDHFSYLTLLTSMFLHGGWMHVLGNMWFLWI
FGDNIEDILGPAKYLIFYLLCGAAAGLTQVLSNPYSRIPTVGASGAIAGVMGAYLIKFPHARIYSLVTVIFFFTTVDVPA
WVMLIYWFAIQFFNGVGTIGYSHVSEGGGVAFFAHVGGFLAGVVLINLMAPRERFSRRQDLYW
>Mature_223_residues
MFPLRDTQPSYSRPVVTVLLIVVNLLVFLFEISLESFDRNAFIAAYGLIPDHFSYLTLLTSMFLHGGWMHVLGNMWFLWI
FGDNIEDILGPAKYLIFYLLCGAAAGLTQVLSNPYSRIPTVGASGAIAGVMGAYLIKFPHARIYSLVTVIFFFTTVDVPA
WVMLIYWFAIQFFNGVGTIGYSHVSEGGGVAFFAHVGGFLAGVVLINLMAPRERFSRRQDLYW

Specific function: Unknown

COG id: COG0705

COG function: function code R; Uncharacterized membrane protein (homolog of Drosophila rhomboid)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24943; Mature: 24943

Theoretical pI: Translated: 7.16; Mature: 7.16

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFPLRDTQPSYSRPVVTVLLIVVNLLVFLFEISLESFDRNAFIAAYGLIPDHFSYLTLLT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
SMFLHGGWMHVLGNMWFLWIFGDNIEDILGPAKYLIFYLLCGAAAGLTQVLSNPYSRIPT
HHHHCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
VGASGAIAGVMGAYLIKFPHARIYSLVTVIFFFTTVDVPAWVMLIYWFAIQFFNGVGTIG
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YSHVSEGGGVAFFAHVGGFLAGVVLINLMAPRERFSRRQDLYW
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCC
>Mature Secondary Structure
MFPLRDTQPSYSRPVVTVLLIVVNLLVFLFEISLESFDRNAFIAAYGLIPDHFSYLTLLT
CCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCHHHHHHHHHHH
SMFLHGGWMHVLGNMWFLWIFGDNIEDILGPAKYLIFYLLCGAAAGLTQVLSNPYSRIPT
HHHHCCCHHHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHCCC
VGASGAIAGVMGAYLIKFPHARIYSLVTVIFFFTTVDVPAWVMLIYWFAIQFFNGVGTIG
CCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
YSHVSEGGGVAFFAHVGGFLAGVVLINLMAPRERFSRRQDLYW
HHHHCCCCCEEHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA