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The map label for this gene is rfbB [H]

Identifier: 116623729

GI number: 116623729

Start: 5870883

End: 5872196

Strand: Direct

Name: rfbB [H]

Synonym: Acid_4641

Alternate gene names: 116623729

Gene position: 5870883-5872196 (Clockwise)

Preceding gene: 116623728

Following gene: 116623730

Centisome position: 58.91

GC content: 54.49

Gene sequence:

>1314_bases
ATGAATAATACGATCATACGGTGCGATGGCATTGGAAAGCGTTACCGGATTGGCCGGAAGGAGCGCTATCGAACCCTTAG
AGATACACTGAGCGACACGTTCACGGCGCCCCTACGGTGGCGTTGGAACGAGAGCTTGCCGCGGGATTCGGACGCGGAAA
GTTTTTGGGCCCTAAAAGACGTCTCCTTCGAAGTGAAGCAAGGCGATGTGGTGGGAATCATTGGGCGAAATGGAGCGGGT
AAGAGTACGCTTTTGAAAATATTGTCGCGCATCACCGAACCGACAGAAGGTTACGCGGAGATTCGGGGACGGGTGGCTTC
GCTTTTGGAGGTTGGAACCGGATTTCATCCCGAACTGACCGGCCGAGAAAACATCTACCTGAACGGCGCGATTCTGGGAA
TGAAGCGACTGGAAGTAGAACGAAAGTTCGATGAAATTGTTGCTTTTGCCGAGATTGAGAAATTCCTCGACACCCCAGTA
AAACGCTACAGCAGTGGCATGTTCGTCCGTCTCGCGTTTGCTGTTGCCGCCCACCTGGAACCGGAGATTCTGATCATTGA
CGAAGTACTTGCGGTCGGCGACGCCGAATTTCAGAGAAAGTGCCTGGGTAAGATCGAAAGCGCAGCGAGCGGGGAGGGGC
GTACGGTCCTGTTTGTGAGCCATAACATCGCCGCAGTCGAAGCCCTTTGTTCTTCCGCGATCCTCCTCTCAGGCGGTTCC
GTCGCGGCAAGTGGGCCAACTGGAGGAATCGTCCAAGAATACCTGAGCGATATTCGGGGGAGCGCAGTGACTCCGCTTAA
GGATAGAAAGGATCGGGAGGGTTCGGGAGCCGTGCGGTTCACGGCCGTGTCCCTAGCGGATGGTACTGGCAGTAGCACTT
CCAGTTTTCAATGCGGGGCTGAAGCAATTCTCAATCTGCAATTTGCGAATACAACTGATCGGGCAATCAGGAATCTCCGA
GTCGCGGTCTTACTCTCGAATGACGTTGGCCAACGAGTACTACTGCTTGATACGACATTGGTCGGCCAGGATATGAAGGG
TATTGCCGAGGGATACGGTGTGATCCGAATTCTAATCCGGAAGCTTTGCCTCCTACCTGGCCGATACCACTTCACGATCT
GGTCCACCGCAAGCGGCGTCGTCGCTGATTGGATCAAGAATGCGGGTACTATCGATGTCCAAGGTGGCGATTACTTCGGC
ACGGGACAGCTCCCGCTTCACGGGGAAGGAGTTTTTGTGGTGGAACACGAGTTTGAGTACGAGCCTGGGGCTGGGACCCG
CATTTCCGAACTGGCGAGGCAATCAAATTGTTGA

Upstream 100 bases:

>100_bases
CGTCTCAGTCGCAGTGGTCGTGGTGATTCTCGTCGGGGGTCTATACTACTTCCGGAGCATGGAAAAGACGTTTGCAGACG
TGGTTTAGGGTTTTGCGTGC

Downstream 100 bases:

>100_bases
GAAGAATTTCGCACCCGGTGCGGTGACGCGGCAACCCTACAAATATGCGATGCCGAGTGTGTGCAGCCGATCCGGTAACC
GAGATTGGCGCCGTGGAGTA

Product: ABC transporter-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 437; Mature: 437

Protein sequence:

>437_residues
MNNTIIRCDGIGKRYRIGRKERYRTLRDTLSDTFTAPLRWRWNESLPRDSDAESFWALKDVSFEVKQGDVVGIIGRNGAG
KSTLLKILSRITEPTEGYAEIRGRVASLLEVGTGFHPELTGRENIYLNGAILGMKRLEVERKFDEIVAFAEIEKFLDTPV
KRYSSGMFVRLAFAVAAHLEPEILIIDEVLAVGDAEFQRKCLGKIESAASGEGRTVLFVSHNIAAVEALCSSAILLSGGS
VAASGPTGGIVQEYLSDIRGSAVTPLKDRKDREGSGAVRFTAVSLADGTGSSTSSFQCGAEAILNLQFANTTDRAIRNLR
VAVLLSNDVGQRVLLLDTTLVGQDMKGIAEGYGVIRILIRKLCLLPGRYHFTIWSTASGVVADWIKNAGTIDVQGGDYFG
TGQLPLHGEGVFVVEHEFEYEPGAGTRISELARQSNC

Sequences:

>Translated_437_residues
MNNTIIRCDGIGKRYRIGRKERYRTLRDTLSDTFTAPLRWRWNESLPRDSDAESFWALKDVSFEVKQGDVVGIIGRNGAG
KSTLLKILSRITEPTEGYAEIRGRVASLLEVGTGFHPELTGRENIYLNGAILGMKRLEVERKFDEIVAFAEIEKFLDTPV
KRYSSGMFVRLAFAVAAHLEPEILIIDEVLAVGDAEFQRKCLGKIESAASGEGRTVLFVSHNIAAVEALCSSAILLSGGS
VAASGPTGGIVQEYLSDIRGSAVTPLKDRKDREGSGAVRFTAVSLADGTGSSTSSFQCGAEAILNLQFANTTDRAIRNLR
VAVLLSNDVGQRVLLLDTTLVGQDMKGIAEGYGVIRILIRKLCLLPGRYHFTIWSTASGVVADWIKNAGTIDVQGGDYFG
TGQLPLHGEGVFVVEHEFEYEPGAGTRISELARQSNC
>Mature_437_residues
MNNTIIRCDGIGKRYRIGRKERYRTLRDTLSDTFTAPLRWRWNESLPRDSDAESFWALKDVSFEVKQGDVVGIIGRNGAG
KSTLLKILSRITEPTEGYAEIRGRVASLLEVGTGFHPELTGRENIYLNGAILGMKRLEVERKFDEIVAFAEIEKFLDTPV
KRYSSGMFVRLAFAVAAHLEPEILIIDEVLAVGDAEFQRKCLGKIESAASGEGRTVLFVSHNIAAVEALCSSAILLSGGS
VAASGPTGGIVQEYLSDIRGSAVTPLKDRKDREGSGAVRFTAVSLADGTGSSTSSFQCGAEAILNLQFANTTDRAIRNLR
VAVLLSNDVGQRVLLLDTTLVGQDMKGIAEGYGVIRILIRKLCLLPGRYHFTIWSTASGVVADWIKNAGTIDVQGGDYFG
TGQLPLHGEGVFVVEHEFEYEPGAGTRISELARQSNC

Specific function: May form an ATP-driven O-antigen export apparatus, in association with RfbA [H]

COG id: COG1134

COG function: function code GM; ABC-type polysaccharide/polyol phosphate transport system, ATPase component

Gene ontology:

Cell location: Cell inner membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI27436953, Length=188, Percent_Identity=30.3191489361702, Blast_Score=97, Evalue=3e-20,
Organism=Homo sapiens, GI153792144, Length=202, Percent_Identity=27.2277227722772, Blast_Score=94, Evalue=2e-19,
Organism=Homo sapiens, GI6005701, Length=190, Percent_Identity=29.4736842105263, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI27477115, Length=202, Percent_Identity=30.1980198019802, Blast_Score=87, Evalue=2e-17,
Organism=Homo sapiens, GI31657092, Length=204, Percent_Identity=30.3921568627451, Blast_Score=84, Evalue=2e-16,
Organism=Homo sapiens, GI27262624, Length=195, Percent_Identity=29.2307692307692, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI27262626, Length=195, Percent_Identity=29.2307692307692, Blast_Score=81, Evalue=2e-15,
Organism=Homo sapiens, GI105990541, Length=192, Percent_Identity=29.1666666666667, Blast_Score=76, Evalue=8e-14,
Organism=Homo sapiens, GI30795238, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI27881501, Length=201, Percent_Identity=26.3681592039801, Blast_Score=72, Evalue=1e-12,
Organism=Homo sapiens, GI150417984, Length=194, Percent_Identity=28.8659793814433, Blast_Score=70, Evalue=4e-12,
Organism=Homo sapiens, GI47078218, Length=194, Percent_Identity=29.3814432989691, Blast_Score=68, Evalue=2e-11,
Organism=Homo sapiens, GI45446740, Length=219, Percent_Identity=26.9406392694064, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI87081709, Length=198, Percent_Identity=25.7575757575758, Blast_Score=85, Evalue=1e-17,
Organism=Escherichia coli, GI1786398, Length=231, Percent_Identity=25.974025974026, Blast_Score=79, Evalue=5e-16,
Organism=Escherichia coli, GI48994943, Length=220, Percent_Identity=26.3636363636364, Blast_Score=76, Evalue=4e-15,
Organism=Escherichia coli, GI1789032, Length=248, Percent_Identity=22.5806451612903, Blast_Score=75, Evalue=8e-15,
Organism=Escherichia coli, GI1787029, Length=226, Percent_Identity=27.8761061946903, Blast_Score=74, Evalue=2e-14,
Organism=Escherichia coli, GI1790467, Length=197, Percent_Identity=25.8883248730964, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1788210, Length=201, Percent_Identity=31.3432835820896, Blast_Score=72, Evalue=7e-14,
Organism=Escherichia coli, GI1789891, Length=210, Percent_Identity=24.7619047619048, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1790525, Length=210, Percent_Identity=28.5714285714286, Blast_Score=71, Evalue=2e-13,
Organism=Escherichia coli, GI1788506, Length=222, Percent_Identity=26.5765765765766, Blast_Score=69, Evalue=5e-13,
Organism=Escherichia coli, GI1786319, Length=199, Percent_Identity=25.6281407035176, Blast_Score=67, Evalue=3e-12,
Organism=Escherichia coli, GI1788761, Length=198, Percent_Identity=23.2323232323232, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI87081791, Length=176, Percent_Identity=22.1590909090909, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI48995001, Length=200, Percent_Identity=26, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87082267, Length=192, Percent_Identity=22.3958333333333, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI87081782, Length=207, Percent_Identity=24.1545893719807, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1786253, Length=201, Percent_Identity=26.865671641791, Blast_Score=63, Evalue=3e-11,
Organism=Escherichia coli, GI1788897, Length=229, Percent_Identity=26.6375545851528, Blast_Score=62, Evalue=6e-11,
Organism=Escherichia coli, GI1788450, Length=202, Percent_Identity=24.7524752475248, Blast_Score=62, Evalue=7e-11,
Organism=Caenorhabditis elegans, GI17565586, Length=236, Percent_Identity=27.1186440677966, Blast_Score=77, Evalue=2e-14,
Organism=Caenorhabditis elegans, GI115533608, Length=260, Percent_Identity=26.1538461538462, Blast_Score=75, Evalue=5e-14,
Organism=Caenorhabditis elegans, GI71983523, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI193202349, Length=206, Percent_Identity=28.1553398058252, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983510, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI71983516, Length=207, Percent_Identity=27.0531400966184, Blast_Score=67, Evalue=3e-11,
Organism=Drosophila melanogaster, GI116007184, Length=211, Percent_Identity=26.5402843601896, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221500365, Length=211, Percent_Identity=26.5402843601896, Blast_Score=77, Evalue=2e-14,
Organism=Drosophila melanogaster, GI221512771, Length=207, Percent_Identity=27.536231884058, Blast_Score=74, Evalue=2e-13,
Organism=Drosophila melanogaster, GI24666092, Length=200, Percent_Identity=28.5, Blast_Score=73, Evalue=3e-13,
Organism=Drosophila melanogaster, GI28573571, Length=251, Percent_Identity=21.9123505976096, Blast_Score=66, Evalue=6e-11,
Organism=Drosophila melanogaster, GI28573573, Length=251, Percent_Identity=21.9123505976096, Blast_Score=65, Evalue=8e-11,
Organism=Drosophila melanogaster, GI24643674, Length=239, Percent_Identity=23.0125523012552, Blast_Score=65, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: 3.6.3.30 [C]

Molecular weight: Translated: 47539; Mature: 47539

Theoretical pI: Translated: 6.53; Mature: 6.53

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
0.9 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNTIIRCDGIGKRYRIGRKERYRTLRDTLSDTFTAPLRWRWNESLPRDSDAESFWALKD
CCCCEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEC
VSFEVKQGDVVGIIGRNGAGKSTLLKILSRITEPTEGYAEIRGRVASLLEVGTGFHPELT
CEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
GRENIYLNGAILGMKRLEVERKFDEIVAFAEIEKFLDTPVKRYSSGMFVRLAFAVAAHLE
CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCC
PEILIIDEVLAVGDAEFQRKCLGKIESAASGEGRTVLFVSHNIAAVEALCSSAILLSGGS
CCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCEEEEECCC
VAASGPTGGIVQEYLSDIRGSAVTPLKDRKDREGSGAVRFTAVSLADGTGSSTSSFQCGA
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
EAILNLQFANTTDRAIRNLRVAVLLSNDVGQRVLLLDTTLVGQDMKGIAEGYGVIRILIR
HHEEEEEECCCHHHHHHCEEEEEEEECCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHH
KLCLLPGRYHFTIWSTASGVVADWIKNAGTIDVQGGDYFGTGQLPLHGEGVFVVEHEFEY
HHHHCCCCEEEEEEECCCHHHHHHHHCCCEEEECCCCEECCCCCEECCCCEEEEEEEECC
EPGAGTRISELARQSNC
CCCCCCHHHHHHHHCCC
>Mature Secondary Structure
MNNTIIRCDGIGKRYRIGRKERYRTLRDTLSDTFTAPLRWRWNESLPRDSDAESFWALKD
CCCCEEEECCCCCHHHCCHHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCCCEEEEEC
VSFEVKQGDVVGIIGRNGAGKSTLLKILSRITEPTEGYAEIRGRVASLLEVGTGFHPELT
CEEEEECCCEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
GRENIYLNGAILGMKRLEVERKFDEIVAFAEIEKFLDTPVKRYSSGMFVRLAFAVAAHLE
CCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHCCCHHHHHHHHHHHHCC
PEILIIDEVLAVGDAEFQRKCLGKIESAASGEGRTVLFVSHNIAAVEALCSSAILLSGGS
CCEEEEEHHHHCCCHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHCEEEEECCC
VAASGPTGGIVQEYLSDIRGSAVTPLKDRKDREGSGAVRFTAVSLADGTGSSTSSFQCGA
EECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCC
EAILNLQFANTTDRAIRNLRVAVLLSNDVGQRVLLLDTTLVGQDMKGIAEGYGVIRILIR
HHEEEEEECCCHHHHHHCEEEEEEEECCCCCEEEEEEEHHHCCHHHHHHHHHHHHHHHHH
KLCLLPGRYHFTIWSTASGVVADWIKNAGTIDVQGGDYFGTGQLPLHGEGVFVVEHEFEY
HHHHCCCCEEEEEEECCCHHHHHHHHCCCEEEECCCCEECCCCCEECCCCEEEEEEEECC
EPGAGTRISELARQSNC
CCCCCCHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]