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The map label for this gene is rfbA [H]

Identifier: 116623728

GI number: 116623728

Start: 5870022

End: 5870870

Strand: Direct

Name: rfbA [H]

Synonym: Acid_4640

Alternate gene names: 116623728

Gene position: 5870022-5870870 (Clockwise)

Preceding gene: 116623727

Following gene: 116623729

Centisome position: 58.9

GC content: 54.65

Gene sequence:

>849_bases
ATGACGGAACAGCCAGGAAACATGACCGCGACGTATGTGTTGCGGATCAAGGCGTCGGGGTCGTGGCCATCGCTGCGGCT
GAAAGATCTTTGGGAATACCGGGAACTCCTCTATTTCTTAGTATGGCGTGACATCAAAGTGCGCTATAAGCAGACCGCAT
TGGGTGCGGCTTGGGCAATTTTGCAGCCCATCCTGACCATGCTTGTCTTCAGTTTGTTTTTCGGGCGCTTGGCCAAGGTG
CCGTCCGACGGAGTTCCTTATCCCGTTTTTGTTTACACAGCGCTGCTGCCGTGGCAATTATTCGCATTTGCCCTTACTGA
ATCGAGCAACAGTCTTGTAGCGAACCAAAACCTCATCACCAAAGTATATTTCCCTCGCCTCGCCGTGCCTATTGGCGCTA
TGCTGGCCGGCTTGGTCGACTTTGGGATCTCTTTTCTCGTCCTCCTGGGACTCTTGTTCTATTACGGAATTACTCCGACG
ATTACACTCCTCGCCCTGCCGCTGTTCTTATTGCTTGCGATTGCGGCGGCTCTCGGCGTGGGTTTGTGGCTCTGCGCGCT
CAACGTCCAATATCGAGATGTGAGATATACCATCCCATTCTTGACGCAATTCTGGATGTTCGCGACGCCGGTAGCCTACT
CGAGCAGCCTGGTCCCGGCCCAATGGCGGGCGCTCTATGGATTAAACCCCATGGCTGGTGTCGTGGAGGGATTTCGCTGG
GCACTCCTGGGAAAAACGCCGGCTCCCGGACCACTACTTGCCGTCTCAGTCGCAGTGGTCGTGGTGATTCTCGTCGGGGG
TCTATACTACTTCCGGAGCATGGAAAAGACGTTTGCAGACGTGGTTTAG

Upstream 100 bases:

>100_bases
GCGCTCGAGTGGAAACGGCTTCGTCGGAAAACTCAGATCGGTAGAGGGTGGCGGCCGGGACCGTAGAGGCCGATTAGAAT
TGGCTCAGGGAACAGCGAAT

Downstream 100 bases:

>100_bases
GGTTTTGCGTGCATGAATAATACGATCATACGGTGCGATGGCATTGGAAAGCGTTACCGGATTGGCCGGAAGGAGCGCTA
TCGAACCCTTAGAGATACAC

Product: ABC-2 type transporter

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 282; Mature: 281

Protein sequence:

>282_residues
MTEQPGNMTATYVLRIKASGSWPSLRLKDLWEYRELLYFLVWRDIKVRYKQTALGAAWAILQPILTMLVFSLFFGRLAKV
PSDGVPYPVFVYTALLPWQLFAFALTESSNSLVANQNLITKVYFPRLAVPIGAMLAGLVDFGISFLVLLGLLFYYGITPT
ITLLALPLFLLLAIAAALGVGLWLCALNVQYRDVRYTIPFLTQFWMFATPVAYSSSLVPAQWRALYGLNPMAGVVEGFRW
ALLGKTPAPGPLLAVSVAVVVVILVGGLYYFRSMEKTFADVV

Sequences:

>Translated_282_residues
MTEQPGNMTATYVLRIKASGSWPSLRLKDLWEYRELLYFLVWRDIKVRYKQTALGAAWAILQPILTMLVFSLFFGRLAKV
PSDGVPYPVFVYTALLPWQLFAFALTESSNSLVANQNLITKVYFPRLAVPIGAMLAGLVDFGISFLVLLGLLFYYGITPT
ITLLALPLFLLLAIAAALGVGLWLCALNVQYRDVRYTIPFLTQFWMFATPVAYSSSLVPAQWRALYGLNPMAGVVEGFRW
ALLGKTPAPGPLLAVSVAVVVVILVGGLYYFRSMEKTFADVV
>Mature_281_residues
TEQPGNMTATYVLRIKASGSWPSLRLKDLWEYRELLYFLVWRDIKVRYKQTALGAAWAILQPILTMLVFSLFFGRLAKVP
SDGVPYPVFVYTALLPWQLFAFALTESSNSLVANQNLITKVYFPRLAVPIGAMLAGLVDFGISFLVLLGLLFYYGITPTI
TLLALPLFLLLAIAAALGVGLWLCALNVQYRDVRYTIPFLTQFWMFATPVAYSSSLVPAQWRALYGLNPMAGVVEGFRWA
LLGKTPAPGPLLAVSVAVVVVILVGGLYYFRSMEKTFADVV

Specific function: May form an ATP-driven O-antigen export apparatus, in association with rfbB [H]

COG id: COG1682

COG function: function code GM; ABC-type polysaccharide/polyol phosphate export systems, permease component

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-2 domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000412
- InterPro:   IPR013525 [H]

Pfam domain/function: PF01061 ABC2_membrane [H]

EC number: NA

Molecular weight: Translated: 31353; Mature: 31222

Theoretical pI: Translated: 9.84; Mature: 9.84

Prosite motif: PS51012 ABC_TM2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTEQPGNMTATYVLRIKASGSWPSLRLKDLWEYRELLYFLVWRDIKVRYKQTALGAAWAI
CCCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQPILTMLVFSLFFGRLAKVPSDGVPYPVFVYTALLPWQLFAFALTESSNSLVANQNLIT
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHH
KVYFPRLAVPIGAMLAGLVDFGISFLVLLGLLFYYGITPTITLLALPLFLLLAIAAALGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GLWLCALNVQYRDVRYTIPFLTQFWMFATPVAYSSSLVPAQWRALYGLNPMAGVVEGFRW
HHHHHHHCCEEHHHEEEHHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
ALLGKTPAPGPLLAVSVAVVVVILVGGLYYFRSMEKTFADVV
HEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TEQPGNMTATYVLRIKASGSWPSLRLKDLWEYRELLYFLVWRDIKVRYKQTALGAAWAI
CCCCCCCEEEEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LQPILTMLVFSLFFGRLAKVPSDGVPYPVFVYTALLPWQLFAFALTESSNSLVANQNLIT
HHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEEECCCHHH
KVYFPRLAVPIGAMLAGLVDFGISFLVLLGLLFYYGITPTITLLALPLFLLLAIAAALGV
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHH
GLWLCALNVQYRDVRYTIPFLTQFWMFATPVAYSSSLVPAQWRALYGLNPMAGVVEGFRW
HHHHHHHCCEEHHHEEEHHHHHHHHHHHCCHHHCCCCCHHHHHHHHCCCHHHHHHHHHHH
ALLGKTPAPGPLLAVSVAVVVVILVGGLYYFRSMEKTFADVV
HEECCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8626291 [H]