| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is rng [H]
Identifier: 116623271
GI number: 116623271
Start: 5297542
End: 5300283
Strand: Reverse
Name: rng [H]
Synonym: Acid_4178
Alternate gene names: 116623271
Gene position: 5300283-5297542 (Counterclockwise)
Preceding gene: 116623272
Following gene: 116623267
Centisome position: 53.19
GC content: 64.26
Gene sequence:
>2742_bases ATGTCGAAAGAGTTAATCATTTCCGCGACGCGCCATGAAACCCGCGTGGCGGTAATTGAAGAAGATCAGGTCGTTGAGAT TTATCATCAACGCGAGAACGAGTATTCCCTCGCCGGTTCCATCCACAAAGGGAGAGTGACGCGCGTGCTGCCCGGCATGC AGTCGGCTTTCGTCGATATTGGCCTGGGCCGCGACGCCTTCCTGTATGTCTCCGACTTCTTCGAGGACAACGACGAGTAC GACAAGATCGTCAGCTCGGTGGAAGAAAAAGTTCTCAAACTGGATCGCGTTCCGGCGGCGCAGCCCGCCCCCGCAGCCCA GGAAGGCACGCCAGAGGAGGTTGCCGGTACGCCTTCCGCCGCTCCCGTCAGCGAGGCGGCCGCGGTACCCCAGAATGTTG CGCCGCTCGGTCCCCCGGCCAGCGCCATGCAGGTGCCTCCCGGGATGGAACGCCGTTCCGACCGCAGTGGAGATCGCGGC GGAGACCGCGGTGGCGATCGTGGCGGAGACCGCGGTGGAGACCGCGACCGTCGCGGCGGCAGGCGATCGCGTCGCGGCCG CGGCAATCGCGGTGGTGGCGGCAGAGGTTCGCTGCCCGAATCCAAATTCTATTCGCCCCGGCAGGAAGGTGAAGTCCACG AGCCGGCGCCGGCGCCCACACCGGTGGCGGCGGAAGAGCCATCCGCCTCTGAGCCGAGAGTGGTATTCGATATGGAGCAG GACGATTTCTTCGTGCTGCCCGGCGAATCCCTCGCCAAGTACAAGGGCGGTCCCGAGGACGAGGCGGAGGAATCATCCAA TGCAGGCGCCGCTGAGGAAACGGAGCAGCCCGCTGCAACCGCCGAGCCCGATCTGGTGCACGAAGCCGTAATCGAAGCCC GTGTGGAAGCGGTCGAAGTCGCGGCCGAGGTGGTAGCGGCAACAGAACCCGAGGTGGAAGCGGCTCCGGCTAAGGCGGCC GAACCCGAGTCCGCGCGGGTTGCAGAACCCGCTGTTGGGCCGCCGGTTCAGGTGGTTTCGTTCGAAACCGGCTTCACCTC CATCTATACCGAGGAAGCCCCCGCCGATTTTGAAGCCGTCGAAGCCGCCGAAGCCGGGGTTGAATCGGAAGCCGAATCGG AAGCCGAATCGGAAGCCGGATCCGAAGCTCAGGCCGAGGCCGGCATGGAGCTGGAAGGCGACGCGGAAGGCGAACTCGAG GCCGATGCCGAGGGCGGCGAACCCCACGCGGAAGGCGAAGCCGGGGCGGAAACCGTGGTAGAAGACGAAGGTCCCGAGCC CGCGCGCATCCCCACCAGTCTCACCGCCACCCTGCGCGAGCAGGGTTCGCGTTATCCGCACCGGGTTTCGCGCCGCACGC GCCGCAAAGGCCGCGGCGAGCGTGGACCCGACCGCGGACCCCTGCCCGAGGGCCAGCGCCCACCGCAGGGCGAACCTCGC CCGCAGGAAGGCCGGCCGGAGCAGCGTACCAGTCCTCGTCCCGAGGGCCGCCCCGAGAGCCGTCCGGAAGCGCGTCCCGA TGCCCGCTCGGATCGTCCCCCGCTGCCTTCGATCAGCGATCTGCTGAAGGAAGGCCAGGAAATCATCGTTCAGATCGCCA AGGAGCCGCTCGGTCAGAAGGGCGCGCGCATCACCTCGCACATCGCGCTCCCCGGCCGCTTCCTGGTCTACATGCCGACC GTGGACCACATCGGCGTCTCGCGCAAGATTCCGAGCGACGACGAACGCCTCCGGCTGAAACGGATTCTGCAGACCAACCG CACCGGCATTCCCGGCGGCTACATCGTGCGCACGGCCGGAGACGGCCGCACCGAAGAAGAACTTCGCGCCGATATGATGT TCCTCTACAACCTGTGGCTGGATATGCGGCAGAAGGCCGAGCGCCGCGCCGCCCCGCTGTTGATCCACCACGACCTCAAC GTAGTAGAGCGCATTCTCCGGGACCAGCTGACCAGCTCTTACAAGAGCGTCTGGGTGGATAACGAAGAGGTCTACGAGAG CGTACTGCGCTTCGTGCAGCGCTTCCAGCCGGCACTGGTCAATCGCGTGAAGATGTATACGCGTTCCACGCCGATCTTCG ACGAATTCGGCATCACCGCCGAGTTAGAGAAGGCGCTCCGTCCCAAGGTGTGGTTGAAATCCGGCGGCTACATCGTCATC AACCAGACCGAGGCGCTGGTGGCGATTGATATCAACACGGGCAAGTACGTGGGCAAGTCGAACCGCCTGGAAGATACCAT CGTCAAGACCAATACGGACGCCATCAAAGAGATCGTCCGCCAGATCCGCCTGCGCGATTTGGGCGGCATCATCGTGGTTG ATTTCATCGACATGGACGAGCGCAAGAATCGCCAGAAGGTGATGCAGGCGCTCGAAGAGGCCATGCGCGCCGACCGCGCT CCGTACAAGATTCTGCAGTTCAACGATTTCGGGCTGGTGGCGATCACGCGAAAGCGCGTCAAGCAGAGCCTGGAACGGAC CCTCTGCACGCCGTGCCCGTATTGCGAGGGCGCCGGTTACGTGAAGAGTCCGCAGACCGTCGTCGGCGAGATTCTGCAGG AGGCCCACAAGATCGCGCGCGCCGTGGATGGCAACGTCATGCTGCGCGTTGCTCCCGAAGTGGCGAAACTCCTCAAGAGC AACCAGAACACCTTCCTGCAGGAAGTGGAAGAGATCCTGGGGCGTCCCGTGATCGTCAAGAGCGATCCGTTGCTGCACCA GGAGAAATTCGACCTGGCGTAA
Upstream 100 bases:
>100_bases GGCATTACGCAGGTTGGCCAGCGGCACCGGCAGACCTCGACACACACGCTAACGCAGCCACTTCCTATCGGGAACTCTGC ACGCCCCGGGGAGGAAGTAG
Downstream 100 bases:
>100_bases GGCCACCGACGAGTGGGACAGGCCAGAGGCCTGTCCTACCTGGCGAACGTCAGACGGAAGCCGGTGGAGAGAATCAGGTC GTTGCGCTGGCGGCCCTGGA
Product: ribonuclease
Products: NA
Alternate protein names: RNase G; Cytoplasmic axial filament protein [H]
Number of amino acids: Translated: 913; Mature: 912
Protein sequence:
>913_residues MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDIGLGRDAFLYVSDFFEDNDEY DKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSAAPVSEAAAVPQNVAPLGPPASAMQVPPGMERRSDRSGDRG GDRGGDRGGDRGGDRDRRGGRRSRRGRGNRGGGGRGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQ DDFFVLPGESLAKYKGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEVAAEVVAATEPEVEAAPAKAA EPESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAVEAAEAGVESEAESEAESEAGSEAQAEAGMELEGDAEGELE ADAEGGEPHAEGEAGAETVVEDEGPEPARIPTSLTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPT VDHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLN VVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVI NQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRA PYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVDGNVMLRVAPEVAKLLKS NQNTFLQEVEEILGRPVIVKSDPLLHQEKFDLA
Sequences:
>Translated_913_residues MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDIGLGRDAFLYVSDFFEDNDEY DKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSAAPVSEAAAVPQNVAPLGPPASAMQVPPGMERRSDRSGDRG GDRGGDRGGDRGGDRDRRGGRRSRRGRGNRGGGGRGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQ DDFFVLPGESLAKYKGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEVAAEVVAATEPEVEAAPAKAA EPESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAVEAAEAGVESEAESEAESEAGSEAQAEAGMELEGDAEGELE ADAEGGEPHAEGEAGAETVVEDEGPEPARIPTSLTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPT VDHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLN VVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVI NQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRA PYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVDGNVMLRVAPEVAKLLKS NQNTFLQEVEEILGRPVIVKSDPLLHQEKFDLA >Mature_912_residues SKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDIGLGRDAFLYVSDFFEDNDEYD KIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSAAPVSEAAAVPQNVAPLGPPASAMQVPPGMERRSDRSGDRGG DRGGDRGGDRGGDRDRRGGRRSRRGRGNRGGGGRGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQD DFFVLPGESLAKYKGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEVAAEVVAATEPEVEAAPAKAAE PESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAVEAAEAGVESEAESEAESEAGSEAQAEAGMELEGDAEGELEA DAEGGEPHAEGEAGAETVVEDEGPEPARIPTSLTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPRP QEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTV DHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLNV VERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVIN QTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAP YKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVDGNVMLRVAPEVAKLLKSN QNTFLQEVEEILGRPVIVKSDPLLHQEKFDLA
Specific function: Involved in the processing of the 5'-end of 16S rRNA. Could be involved in chromosome segregation and cell division. It may be one of the components of the cytoplasmic axial filaments bundles or merely regulate the formation of this structure [H]
COG id: COG1530
COG function: function code J; Ribonucleases G and E
Gene ontology:
Cell location: Cytoplasm, cytoskeleton [H]
Metaboloic importance: Unknown [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 S1 motif domain [H]
Homologues:
Organism=Escherichia coli, GI87082235, Length=397, Percent_Identity=42.3173803526448, Blast_Score=313, Evalue=3e-86, Organism=Escherichia coli, GI1787325, Length=340, Percent_Identity=41.1764705882353, Blast_Score=254, Evalue=1e-68,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR012340 - InterPro: IPR016027 - InterPro: IPR003029 - InterPro: IPR019307 - InterPro: IPR022967 - InterPro: IPR004659 [H]
Pfam domain/function: PF10150 RNase_E_G; PF00575 S1 [H]
EC number: 3.1.4.- [C]
Molecular weight: Translated: 100115; Mature: 99984
Theoretical pI: Translated: 4.71; Mature: 4.71
Prosite motif: PS50126 S1
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI CCCCEEEEECCCCCEEEEECCCHHHHHHHHCCCCCHHHCCCCCCCHHHHCCCHHHHHEEE GLGRDAFLYVSDFFEDNDEYDKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSA CCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC APVSEAAAVPQNVAPLGPPASAMQVPPGMERRSDRSGDRGGDRGGDRGGDRGGDRDRRGG CCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCC RRSRRGRGNRGGGGRGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQ CHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC DDFFVLPGESLAKYKGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEV CCEEEECCHHHHHCCCCCCCHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH AAEVVAATEPEVEAAPAKAAEPESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAV HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCHHHH EAAEAGVESEAESEAESEAGSEAQAEAGMELEGDAEGELEADAEGGEPHAEGEAGAETVV HHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHC EDEGPEPARIPTSLTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC GARITSHIALPGRFLVYMPTVDHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAG CCCHHHEEECCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECC DGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCC NEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVI CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCCCCEEEECCCEEEE NQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDE ECCCEEEEEECCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCC RKNRQKVMQALEEAMRADRAPYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGY CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCC VKSPQTVVGEILQEAHKIARAVDGNVMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVIVK CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCCCEEEE SDPLLHQEKFDLA CCCCCCCHHCCCC >Mature Secondary Structure SKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI CCCEEEEECCCCCEEEEECCCHHHHHHHHCCCCCHHHCCCCCCCHHHHCCCHHHHHEEE GLGRDAFLYVSDFFEDNDEYDKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSA CCCCCCEEEEHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHCCCCCC APVSEAAAVPQNVAPLGPPASAMQVPPGMERRSDRSGDRGGDRGGDRGGDRGGDRDRRGG CCCHHHHHCCCCCCCCCCCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCHHCCC RRSRRGRGNRGGGGRGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQ CHHHCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECC DDFFVLPGESLAKYKGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEV CCEEEECCHHHHHCCCCCCCHHHHCCCCCCCHHCCCCCCCCCHHHHHHHHHHHHHHHHHH AAEVVAATEPEVEAAPAKAAEPESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAV HHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEECCCCCCCHHHH EAAEAGVESEAESEAESEAGSEAQAEAGMELEGDAEGELEADAEGGEPHAEGEAGAETVV HHHHHCCCHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCEECCCCCCCCCCCCCCCCHHHC EDEGPEPARIPTSLTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPR CCCCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC PQEGRPEQRTSPRPEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQK CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCC GARITSHIALPGRFLVYMPTVDHIGVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAG CCCHHHEEECCCEEEEEECCHHHCCCCCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEECC DGRTEEELRADMMFLYNLWLDMRQKAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVD CCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHHHHHHHCCC NEEVYESVLRFVQRFQPALVNRVKMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVI CHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHCCCHHHHHHHCCCCEEEECCCEEEE NQTEALVAIDINTGKYVGKSNRLEDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDE ECCCEEEEEECCCCCCCCCCCCCCHHHEECCHHHHHHHHHHHHHHHCCCEEEEEEECCCC RKNRQKVMQALEEAMRADRAPYKILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGY CCCHHHHHHHHHHHHHHCCCCEEEEEECCCCEEHHHHHHHHHHHHHHHCCCCCCCCCCCC VKSPQTVVGEILQEAHKIARAVDGNVMLRVAPEVAKLLKSNQNTFLQEVEEILGRPVIVK CCCCHHHHHHHHHHHHHHHHHHCCCEEEEECHHHHHHHHCCCHHHHHHHHHHHCCCEEEE SDPLLHQEKFDLA CCCCCCCHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 11206551; 11258796 [H]