Click here to switch to the map view.

The map label for this gene is 116623254

Identifier: 116623254

GI number: 116623254

Start: 5278047

End: 5278949

Strand: Reverse

Name: 116623254

Synonym: Acid_4161

Alternate gene names: NA

Gene position: 5278949-5278047 (Counterclockwise)

Preceding gene: 116623255

Following gene: 116623253

Centisome position: 52.97

GC content: 67.22

Gene sequence:

>903_bases
ATGCATATGGATCGGCGATTCGTGATGGTGATGGGCGTGAGCCTGGTTTGGGCGCTGATGGTTTCGGCGGCATTTTTCCG
CCTGGCCGGCGGAGGCGGGCGCACGCGGGCGGCGTCGCGCAAGCAGGTGGTGGTGGCCACGCGTCCGCTGCCGGCGGGCA
GCACCCTGGATCGCGACGCGGTGAAACTGCGCAGCGTGCCGGAAGACGTTTTTCCGGCGGGCGCATTTTCGCGCGTGGAA
GACGTTCTGGAGCGGCCCGTGATCAGCGCCATACAGCCCGAGGAGCCGGTGGTGGAAGCGCGGCTCGCGGTCAAGGGCAG
CGGTGCGGGGCTCGGGCCGATGATTCCGACCGGGATGCGCGCGATTTCGGTGCGCGTCAACGATGTGGTGGGGGTGGCGG
GCTTTGTGCTTCCGGGTATGCGGGTGGACGTGCTGGTGACCGGGAAGCCTCTCAATCGCGCGGATACCGAGACGCAGACC
GTGCTGCAGAACATCACGGTGCTTTCCGCGGGACAGACGATCACGACCGATGGCAGAAGCCAGCCGATCATGGCGCCGGT
GGTGACCCTGCTGGTGACTCCCGGAGAGGCCGAAGCATTGACGCTGGCCAACACCGAGGGACACATTCAACTGGTGCTGC
GCAATTCGACCGATCGGATATCGGCGCCCACGCGCGGCCGGCGCTTGCACGAGCTCTACGGAGCGGCGGCAGAGGCGCCC
CCGGGAGAAATCCGGGAAGCGTCGCCGCCAAAAGTAAGACGCTTGGAGATCAAGGCGCCGGAACGCGTCCAGGCGCCGGT
CGCGGCCAGGGTCGCGGTAGCGCCCGATCCCGAACAGATGGTCCTCCTGATTGGCGCGGTCAGGAAGGTCCAGGTGTTCG
CGCCGGAACCGGGGACGAGATGA

Upstream 100 bases:

>100_bases
CGGCCGGCACGCTGCTGCTGCGGCCGCGCACGGCGGCGATTCCGTATGCGCCGGCGATTGTCCTGGGAGCGTGGGTGAGT
TTGCTGGGCGGAGGTTCCTG

Downstream 100 bases:

>100_bases
CGGCCCCGACAGTGGAATCGCGCGTGGAATCCAACTGGGAGCAGCGTCTGTTGCAGAACGCGGCGAGCCCGGCGGCGGTC
AAGCCGGAGTATCAGGAGCT

Product: SAF domain-containing protein

Products: NA

Alternate protein names: Flp Pilus Assembly CpaB; SAF Domain-Containing Protein; Pilus Assembly Protein CpaB; Pilus Assembly Transmembrane Protein; Flp Pilus Assembly Protein; Flp Pilus Assembly Protein CpaB-Like Protein; Pilus Assembly Protein; Flp Pilus Assembly CpaB Domain Protein; Flp Pilus Assembly Protein RcpC/CpaB; CpaB Pilus Assembly Protein; Pilus Assembly-Related Exported Protein; Pilus Assembly Domain-Containing Protein; CpaB2 Pilus Assembly Protein; CpaB Family Protein; CpaB2 Flp Pilus Assembly Protein CpaB; SAF Domain Protein

Number of amino acids: Translated: 300; Mature: 300

Protein sequence:

>300_residues
MHMDRRFVMVMGVSLVWALMVSAAFFRLAGGGGRTRAASRKQVVVATRPLPAGSTLDRDAVKLRSVPEDVFPAGAFSRVE
DVLERPVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQT
VLQNITVLSAGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRLHELYGAAAEAP
PGEIREASPPKVRRLEIKAPERVQAPVAARVAVAPDPEQMVLLIGAVRKVQVFAPEPGTR

Sequences:

>Translated_300_residues
MHMDRRFVMVMGVSLVWALMVSAAFFRLAGGGGRTRAASRKQVVVATRPLPAGSTLDRDAVKLRSVPEDVFPAGAFSRVE
DVLERPVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQT
VLQNITVLSAGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRLHELYGAAAEAP
PGEIREASPPKVRRLEIKAPERVQAPVAARVAVAPDPEQMVLLIGAVRKVQVFAPEPGTR
>Mature_300_residues
MHMDRRFVMVMGVSLVWALMVSAAFFRLAGGGGRTRAASRKQVVVATRPLPAGSTLDRDAVKLRSVPEDVFPAGAFSRVE
DVLERPVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMRAISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQT
VLQNITVLSAGQTITTDGRSQPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRLHELYGAAAEAP
PGEIREASPPKVRRLEIKAPERVQAPVAARVAVAPDPEQMVLLIGAVRKVQVFAPEPGTR

Specific function: Unknown

COG id: COG3745

COG function: function code U; Flp pilus assembly protein CpaB

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31866; Mature: 31866

Theoretical pI: Translated: 10.99; Mature: 10.99

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MHMDRRFVMVMGVSLVWALMVSAAFFRLAGGGGRTRAASRKQVVVATRPLPAGSTLDRDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
VKLRSVPEDVFPAGAFSRVEDVLERPVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMR
HHHHCCCHHHCCCCHHHHHHHHHHCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCE
AISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLSAGQTITTDGRS
EEEEEEHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCEEEECCCEEECCCCC
QPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRLHELYGAAAEAP
CCHHHHHHHEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC
PGEIREASPPKVRRLEIKAPERVQAPVAARVAVAPDPEQMVLLIGAVRKVQVFAPEPGTR
CCCCCCCCCCCEEEEEECCCCHHCCCCCEEEEECCCHHHHEEEEECCEEEEEECCCCCCC
>Mature Secondary Structure
MHMDRRFVMVMGVSLVWALMVSAAFFRLAGGGGRTRAASRKQVVVATRPLPAGSTLDRDA
CCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEECCCCCCCCCCHHH
VKLRSVPEDVFPAGAFSRVEDVLERPVISAIQPEEPVVEARLAVKGSGAGLGPMIPTGMR
HHHHCCCHHHCCCCHHHHHHHHHHCHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCE
AISVRVNDVVGVAGFVLPGMRVDVLVTGKPLNRADTETQTVLQNITVLSAGQTITTDGRS
EEEEEEHHHHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHCEEEECCCEEECCCCC
QPIMAPVVTLLVTPGEAEALTLANTEGHIQLVLRNSTDRISAPTRGRRLHELYGAAAEAP
CCHHHHHHHEEECCCCCCEEEEECCCCEEEEEEECCCCCCCCCCCCHHHHHHHCCCCCCC
PGEIREASPPKVRRLEIKAPERVQAPVAARVAVAPDPEQMVLLIGAVRKVQVFAPEPGTR
CCCCCCCCCCCEEEEEECCCCHHCCCCCEEEEECCCHHHHEEEEECCEEEEEECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA