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The map label for this gene is yrbE [H]

Identifier: 116623110

GI number: 116623110

Start: 5088144

End: 5089337

Strand: Direct

Name: yrbE [H]

Synonym: Acid_4014

Alternate gene names: 116623110

Gene position: 5088144-5089337 (Clockwise)

Preceding gene: 116623109

Following gene: 116623112

Centisome position: 51.06

GC content: 62.14

Gene sequence:

>1194_bases
ATGAAAGCGATCAGCAGGCGACAGGCGCTGGCAGGAGTGGCCAGTGGAATGATGATTGTGAAACCCGAGACCGCATTCGG
ATACCAGGCCAATTCGGCTGTGTCCTATGGCGTGATCGGCACCGGGGGGCGCGGCGTATATGTCGGCACCCACATGGCCA
ACGTCGCGGGCACCAGGCTGGTGGCCATCTGCGACATCTTTCCGGACAGGATCGACAACGGAAAAACCAAGATCCCGGGA
GGCGCGGCGGCGCGCGCCTATCGCGACTATCACGAGCTCCTGGCGCAGGCCGAGATCGACGCGGTGCTGATCACCACGCC
CGTCTACCTGCATCCCGAACACTTCGAAGCGGCGGTGGCCGCGCGCAAGCACATCTACTGCGAGAAGCCCGCGGGCGCGG
ACGTGGCGGGCGTGAAGCGCCTGCTGAAGGCCAACGCCGCCGCCGATAAATCCAAAACCATTCAGTTCGGCCTGCAGCAG
CGCTTCAGCCCCGAATACCTCACCGCCATGCAGCACGCGAAGACCGGCAAAATCGGCGAGATCAAGATGATGATGAGCTA
CTGGGTGCTGGGCGGCGTACCGCCCAAGCCCGCCGCCGCGCCACAGAAGCCGCCCACCGAGGAGGAGAAGATCCGCCGCT
GGGGATCGTGGATGGAGACCTCCGGCGGCTTCATCGTGGAGCAGGATTGCCACGGCGTGGATATGCTCAACTGGTTCGCC
GGCGACCGGCACCCGCTGCACGCGCGCGGCACCGGCAGCCTGCGCTATCCGCTTGGCTACGGCGATCAGGATTCGGACCA
TCACGAAATCACTTACTTCTATCCCAACGGTCTGGAAGGCTGGTTAATCAGCATCAAGAACACCGCCGGATTCCGCGATG
TCAAAGAACAGTTCTACGGCTCCGCCGGCATGCTGGAAACGGCGCGCACTTACTACAAGCTGCACGGACCCATCCCTAAC
TCACCATACAAGAACGCCGATGACCTCACCGATTCCAGCCTGATCGAGCGGCGCACCTCGACGCGTGAGATCACGATCGA
CGCAGTAGAGGCGTTCTTCGCCAGCATTCGGGAGAGTAAGCCCTACAATCTGGCGCCGGTGGCCGCCGATGCCACTTACA
CCTCAATTCTGGGACGCATGGCGTATCAGTTGAAGCGCGAAGTCACGTGGGATGAGATGTTGAAGCTGGCGTAA

Upstream 100 bases:

>100_bases
CGTCCGCGGCGGCCAGTACGGCACGCTCGATATCCCGCTCGGCAAGCTTTCCCAATAGGCCGCGAGCGCTGTTATATTCA
GGCTTCGTCAAGGAGATCCC

Downstream 100 bases:

>100_bases
GCGCCGCCTACTCCTGGAAGAAATAGCCGCGCCCGCGCAGGGTCAGAATATGACGCGGACGGTGCGGCGCATCTTCGAGC
TTCTGGCGCAAAAGCGAAAC

Product: oxidoreductase domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 397; Mature: 397

Protein sequence:

>397_residues
MKAISRRQALAGVASGMMIVKPETAFGYQANSAVSYGVIGTGGRGVYVGTHMANVAGTRLVAICDIFPDRIDNGKTKIPG
GAAARAYRDYHELLAQAEIDAVLITTPVYLHPEHFEAAVAARKHIYCEKPAGADVAGVKRLLKANAAADKSKTIQFGLQQ
RFSPEYLTAMQHAKTGKIGEIKMMMSYWVLGGVPPKPAAAPQKPPTEEEKIRRWGSWMETSGGFIVEQDCHGVDMLNWFA
GDRHPLHARGTGSLRYPLGYGDQDSDHHEITYFYPNGLEGWLISIKNTAGFRDVKEQFYGSAGMLETARTYYKLHGPIPN
SPYKNADDLTDSSLIERRTSTREITIDAVEAFFASIRESKPYNLAPVAADATYTSILGRMAYQLKREVTWDEMLKLA

Sequences:

>Translated_397_residues
MKAISRRQALAGVASGMMIVKPETAFGYQANSAVSYGVIGTGGRGVYVGTHMANVAGTRLVAICDIFPDRIDNGKTKIPG
GAAARAYRDYHELLAQAEIDAVLITTPVYLHPEHFEAAVAARKHIYCEKPAGADVAGVKRLLKANAAADKSKTIQFGLQQ
RFSPEYLTAMQHAKTGKIGEIKMMMSYWVLGGVPPKPAAAPQKPPTEEEKIRRWGSWMETSGGFIVEQDCHGVDMLNWFA
GDRHPLHARGTGSLRYPLGYGDQDSDHHEITYFYPNGLEGWLISIKNTAGFRDVKEQFYGSAGMLETARTYYKLHGPIPN
SPYKNADDLTDSSLIERRTSTREITIDAVEAFFASIRESKPYNLAPVAADATYTSILGRMAYQLKREVTWDEMLKLA
>Mature_397_residues
MKAISRRQALAGVASGMMIVKPETAFGYQANSAVSYGVIGTGGRGVYVGTHMANVAGTRLVAICDIFPDRIDNGKTKIPG
GAAARAYRDYHELLAQAEIDAVLITTPVYLHPEHFEAAVAARKHIYCEKPAGADVAGVKRLLKANAAADKSKTIQFGLQQ
RFSPEYLTAMQHAKTGKIGEIKMMMSYWVLGGVPPKPAAAPQKPPTEEEKIRRWGSWMETSGGFIVEQDCHGVDMLNWFA
GDRHPLHARGTGSLRYPLGYGDQDSDHHEITYFYPNGLEGWLISIKNTAGFRDVKEQFYGSAGMLETARTYYKLHGPIPN
SPYKNADDLTDSSLIERRTSTREITIDAVEAFFASIRESKPYNLAPVAADATYTSILGRMAYQLKREVTWDEMLKLA

Specific function: Unknown

COG id: COG0673

COG function: function code R; Predicted dehydrogenases and related proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the gfo/idh/mocA family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR016040
- InterPro:   IPR000683
- InterPro:   IPR004104 [H]

Pfam domain/function: PF01408 GFO_IDH_MocA; PF02894 GFO_IDH_MocA_C [H]

EC number: 1.-.-.- [C]

Molecular weight: Translated: 43729; Mature: 43729

Theoretical pI: Translated: 8.64; Mature: 8.64

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKAISRRQALAGVASGMMIVKPETAFGYQANSAVSYGVIGTGGRGVYVGTHMANVAGTRL
CCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHHCCCEE
VAICDIFPDRIDNGKTKIPGGAAARAYRDYHELLAQAEIDAVLITTPVYLHPEHFEAAVA
EEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEECCHHHHHHHH
ARKHIYCEKPAGADVAGVKRLLKANAAADKSKTIQFGLQQRFSPEYLTAMQHAKTGKIGE
HHHHEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHH
IKMMMSYWVLGGVPPKPAAAPQKPPTEEEKIRRWGSWMETSGGFIVEQDCHGVDMLNWFA
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC
GDRHPLHARGTGSLRYPLGYGDQDSDHHEITYFYPNGLEGWLISIKNTAGFRDVKEQFYG
CCCCCEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHCC
SAGMLETARTYYKLHGPIPNSPYKNADDLTDSSLIERRTSTREITIDAVEAFFASIRESK
CCCHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC
PYNLAPVAADATYTSILGRMAYQLKREVTWDEMLKLA
CCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCC
>Mature Secondary Structure
MKAISRRQALAGVASGMMIVKPETAFGYQANSAVSYGVIGTGGRGVYVGTHMANVAGTRL
CCCHHHHHHHHHHHCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEEECHHHHHCCCEE
VAICDIFPDRIDNGKTKIPGGAAARAYRDYHELLAQAEIDAVLITTPVYLHPEHFEAAVA
EEEEHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEECCEEECCHHHHHHHH
ARKHIYCEKPAGADVAGVKRLLKANAAADKSKTIQFGLQQRFSPEYLTAMQHAKTGKIGE
HHHHEEECCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHCCCHHHHHHHHHHCCCCCHH
IKMMMSYWVLGGVPPKPAAAPQKPPTEEEKIRRWGSWMETSGGFIVEQDCHGVDMLNWFA
HHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHC
GDRHPLHARGTGSLRYPLGYGDQDSDHHEITYFYPNGLEGWLISIKNTAGFRDVKEQFYG
CCCCCEEECCCCCEECCCCCCCCCCCCCEEEEEECCCCCEEEEEEECCCCHHHHHHHHCC
SAGMLETARTYYKLHGPIPNSPYKNADDLTDSSLIERRTSTREITIDAVEAFFASIRESK
CCCHHHHHHHHEEEECCCCCCCCCCCCCCCHHHHHHHHCCCCEEEHHHHHHHHHHHHCCC
PYNLAPVAADATYTSILGRMAYQLKREVTWDEMLKLA
CCCCCEEECCHHHHHHHHHHHHHHHHCCCHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377; 9025289 [H]