Click here to switch to the map view.

The map label for this gene is oppD [H]

Identifier: 116622562

GI number: 116622562

Start: 4376644

End: 4377327

Strand: Reverse

Name: oppD [H]

Synonym: Acid_3460

Alternate gene names: 116622562

Gene position: 4377327-4376644 (Counterclockwise)

Preceding gene: 116622563

Following gene: 116622561

Centisome position: 43.92

GC content: 66.37

Gene sequence:

>684_bases
ATGCCGTCCGAGCCGCTGCTCGAAGTTCGCGATTTGACGATTTCCCTGCTGCCGGACCGCACATTGCTGCACGACGTTTG
CTTCTCGATTCCACCGGCCACGATCGTTGGACTCGCGGGCGATTCGGGATGCGGCAAGACCACGCTGGCACTGGCGATCT
TGAAGCTGCTGCCCCCGACACCTTATCGCGTTGCCGGGCAGATCTTGTGGCGCGGGCGCGACCTGGCGGCGGCCGGCGAG
CAGGAACTGCAAGGCGTGCGCGGCGCACAGATCGCGATGATTTTTCAGGATCCGCTGCAGGCGCTCAATCCGGTGCTGCG
GGTCGGGGACCAGGTGCGGGAGGTACTGTACGCGCACGGGGCGCCGGGCGATCCGGCCAAGTTGCTGGCGCTGGCCGGGC
TCGGGGACGCGACTCGGGTGCTGCGCGCATATCCGCATGAACTATCGGGCGGCCAGAGGCAGCGGGTGACGATCGCGCAG
GCGCTGGCGTGCGGTCCGGCGCTGATTATCGCGGACGAACCTTTCACGGCGCTCGATGCCCCGCGGGTGGTGGAATTGGC
GGCGCTCTTCGGGAGGCTGCGCGATGAGCTGGGGACGTCATTTCTGTTGATCAGTCATCATGCGGGAGTGCTGGGGAATA
TGGCGAACCGGGTGTTACGGATTGGGGGCGGGCGTGTGGAGTAG

Upstream 100 bases:

>100_bases
CACGCATTCGTGCACCTGATCCCGCGGATTCCCGGCGAGAGCTACGACAAGCCGCGCGGCGTCGAGTGGGTGGATCTGGG
TTCGCAATAGAATAGGACGA

Downstream 100 bases:

>100_bases
GGGGCCAAGATCGGCGGCACCACAGTGCGGCAGGGCGCGACCTGGGGCTGCGTTTCCGAAAAGGGCGGCCGCGTTGGTAC
TGGGTAAGCCGGCTGAAATC

Product: ABC transporter-like protein

Products: ADP; phosphate; oligopeptides [Cytoplasm] [C]

Alternate protein names: Stage 0 sporulation protein KD [H]

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPSEPLLEVRDLTISLLPDRTLLHDVCFSIPPATIVGLAGDSGCGKTTLALAILKLLPPTPYRVAGQILWRGRDLAAAGE
QELQGVRGAQIAMIFQDPLQALNPVLRVGDQVREVLYAHGAPGDPAKLLALAGLGDATRVLRAYPHELSGGQRQRVTIAQ
ALACGPALIIADEPFTALDAPRVVELAALFGRLRDELGTSFLLISHHAGVLGNMANRVLRIGGGRVE

Sequences:

>Translated_227_residues
MPSEPLLEVRDLTISLLPDRTLLHDVCFSIPPATIVGLAGDSGCGKTTLALAILKLLPPTPYRVAGQILWRGRDLAAAGE
QELQGVRGAQIAMIFQDPLQALNPVLRVGDQVREVLYAHGAPGDPAKLLALAGLGDATRVLRAYPHELSGGQRQRVTIAQ
ALACGPALIIADEPFTALDAPRVVELAALFGRLRDELGTSFLLISHHAGVLGNMANRVLRIGGGRVE
>Mature_226_residues
PSEPLLEVRDLTISLLPDRTLLHDVCFSIPPATIVGLAGDSGCGKTTLALAILKLLPPTPYRVAGQILWRGRDLAAAGEQ
ELQGVRGAQIAMIFQDPLQALNPVLRVGDQVREVLYAHGAPGDPAKLLALAGLGDATRVLRAYPHELSGGQRQRVTIAQA
LACGPALIIADEPFTALDAPRVVELAALFGRLRDELGTSFLLISHHAGVLGNMANRVLRIGGGRVE

Specific function: Part of the binding protein-dependent transport system for oligopeptides. Probably responsible for energy coupling to the transport system. Required for sporulation and competence [H]

COG id: COG0444

COG function: function code EP; ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transporter domain [H]

Homologues:

Organism=Homo sapiens, GI9665248, Length=238, Percent_Identity=27.7310924369748, Blast_Score=67, Evalue=2e-11,
Organism=Escherichia coli, GI48994883, Length=233, Percent_Identity=37.7682403433476, Blast_Score=160, Evalue=4e-41,
Organism=Escherichia coli, GI1788506, Length=233, Percent_Identity=39.4849785407725, Blast_Score=156, Evalue=1e-39,
Organism=Escherichia coli, GI1787759, Length=234, Percent_Identity=40.1709401709402, Blast_Score=149, Evalue=2e-37,
Organism=Escherichia coli, GI145693107, Length=234, Percent_Identity=35.8974358974359, Blast_Score=139, Evalue=1e-34,
Organism=Escherichia coli, GI1789963, Length=207, Percent_Identity=35.7487922705314, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787500, Length=231, Percent_Identity=34.1991341991342, Blast_Score=121, Evalue=3e-29,
Organism=Escherichia coli, GI1789890, Length=229, Percent_Identity=34.4978165938865, Blast_Score=117, Evalue=4e-28,
Organism=Escherichia coli, GI1789962, Length=236, Percent_Identity=33.0508474576271, Blast_Score=116, Evalue=1e-27,
Organism=Escherichia coli, GI1787548, Length=228, Percent_Identity=31.140350877193, Blast_Score=105, Evalue=2e-24,
Organism=Escherichia coli, GI1787758, Length=231, Percent_Identity=32.034632034632, Blast_Score=102, Evalue=2e-23,
Organism=Escherichia coli, GI1789891, Length=211, Percent_Identity=33.175355450237, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI1786398, Length=209, Percent_Identity=35.8851674641148, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1788761, Length=215, Percent_Identity=31.1627906976744, Blast_Score=90, Evalue=1e-19,
Organism=Escherichia coli, GI1789032, Length=206, Percent_Identity=32.0388349514563, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI48994997, Length=230, Percent_Identity=32.1739130434783, Blast_Score=89, Evalue=3e-19,
Organism=Escherichia coli, GI1787547, Length=236, Percent_Identity=27.9661016949153, Blast_Score=88, Evalue=6e-19,
Organism=Escherichia coli, GI1789873, Length=224, Percent_Identity=30.8035714285714, Blast_Score=85, Evalue=3e-18,
Organism=Escherichia coli, GI87081791, Length=223, Percent_Identity=32.2869955156951, Blast_Score=83, Evalue=2e-17,
Organism=Escherichia coli, GI1787029, Length=229, Percent_Identity=31.8777292576419, Blast_Score=82, Evalue=2e-17,
Organism=Escherichia coli, GI87081834, Length=211, Percent_Identity=32.7014218009479, Blast_Score=82, Evalue=3e-17,
Organism=Escherichia coli, GI1787105, Length=243, Percent_Identity=32.0987654320988, Blast_Score=81, Evalue=6e-17,
Organism=Escherichia coli, GI1788225, Length=230, Percent_Identity=32.1739130434783, Blast_Score=80, Evalue=1e-16,
Organism=Escherichia coli, GI87081709, Length=234, Percent_Identity=26.9230769230769, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI87082267, Length=229, Percent_Identity=28.82096069869, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1786563, Length=211, Percent_Identity=34.5971563981043, Blast_Score=75, Evalue=3e-15,
Organism=Escherichia coli, GI1787370, Length=202, Percent_Identity=29.2079207920792, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1790467, Length=206, Percent_Identity=28.1553398058252, Blast_Score=74, Evalue=1e-14,
Organism=Escherichia coli, GI1787712, Length=204, Percent_Identity=29.9019607843137, Blast_Score=72, Evalue=2e-14,
Organism=Escherichia coli, GI1786703, Length=236, Percent_Identity=30.5084745762712, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1787164, Length=208, Percent_Identity=34.6153846153846, Blast_Score=69, Evalue=2e-13,
Organism=Escherichia coli, GI1788450, Length=185, Percent_Identity=30.2702702702703, Blast_Score=68, Evalue=5e-13,
Organism=Escherichia coli, GI1786872, Length=191, Percent_Identity=30.3664921465969, Blast_Score=67, Evalue=9e-13,
Organism=Escherichia coli, GI1789586, Length=209, Percent_Identity=31.5789473684211, Blast_Score=66, Evalue=2e-12,
Organism=Escherichia coli, GI1788644, Length=173, Percent_Identity=31.7919075144509, Blast_Score=65, Evalue=3e-12,
Organism=Escherichia coli, GI1786345, Length=238, Percent_Identity=28.1512605042017, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786981, Length=199, Percent_Identity=32.6633165829146, Blast_Score=61, Evalue=6e-11,
Organism=Saccharomyces cerevisiae, GI6324985, Length=231, Percent_Identity=24.6753246753247, Blast_Score=65, Evalue=9e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593
- InterPro:   IPR010066
- InterPro:   IPR013563 [H]

Pfam domain/function: PF00005 ABC_tran; PF08352 oligo_HPY [H]

EC number: NA

Molecular weight: Translated: 24046; Mature: 23915

Theoretical pI: Translated: 7.04; Mature: 7.04

Prosite motif: PS00211 ABC_TRANSPORTER_1 ; PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.3 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
1.3 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSEPLLEVRDLTISLLPDRTLLHDVCFSIPPATIVGLAGDSGCGKTTLALAILKLLPPT
CCCCCCHHHHHCEEEECCCHHHHHHHHHCCCCHHEEEECCCCCCCHHHHHHHHHHHCCCC
PYRVAGQILWRGRDLAAAGEQELQGVRGAQIAMIFQDPLQALNPVLRVGDQVREVLYAHG
CHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHCC
APGDPAKLLALAGLGDATRVLRAYPHELSGGQRQRVTIAQALACGPALIIADEPFTALDA
CCCCHHHHHHHHCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
PRVVELAALFGRLRDELGTSFLLISHHAGVLGNMANRVLRIGGGRVE
CHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCC
>Mature Secondary Structure 
PSEPLLEVRDLTISLLPDRTLLHDVCFSIPPATIVGLAGDSGCGKTTLALAILKLLPPT
CCCCCHHHHHCEEEECCCHHHHHHHHHCCCCHHEEEECCCCCCCHHHHHHHHHHHCCCC
PYRVAGQILWRGRDLAAAGEQELQGVRGAQIAMIFQDPLQALNPVLRVGDQVREVLYAHG
CHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEEEHHHHHHHHHHHHHCCHHHHHHHHHCC
APGDPAKLLALAGLGDATRVLRAYPHELSGGQRQRVTIAQALACGPALIIADEPFTALDA
CCCCHHHHHHHHCCCHHHHHHHHCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCCC
PRVVELAALFGRLRDELGTSFLLISHHAGVLGNMANRVLRIGGGRVE
CHHHHHHHHHHHHHHHHCCEEEEEECCCHHHHHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: ATP; oligopeptides [Periplasm]; H2O [C]

Specific reaction: ATP + oligopeptides [Periplasm] + H2O = ADP + phosphate + oligopeptides [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 1901616; 1899858; 9384377 [H]