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The map label for this gene is 116622452

Identifier: 116622452

GI number: 116622452

Start: 4239118

End: 4239429

Strand: Direct

Name: 116622452

Synonym: Acid_3350

Alternate gene names: NA

Gene position: 4239118-4239429 (Clockwise)

Preceding gene: 116622451

Following gene: 116622457

Centisome position: 42.54

GC content: 56.41

Gene sequence:

>312_bases
GTGTTTGTCCCAGCGATAGCGCTCGGTGAACTGTATTTCGGTGCGGCGAAATCGGACCGTTCGACCGAAAACGCCGCCAG
GTTGGAAGAGTTCGCGGCCGGACGCACCATCATTCACTGCGATATCATGGTGGCCCGCGAATACGGGCGCCTCAAGCAGT
GTCTGAAGCAAAAAGGGACGCCACTTCCGGAAAACGATATTTGGATTGCGGCCGCCGCAACGTGCCATGGTATGACACTG
GTCACGCGAGATCATCACTTTGACCGGATTGAAGGGTTGCAAACTTCGGACTGGTCCACGCATCCCCAATAG

Upstream 100 bases:

>100_bases
GGAATGCGAGAGGGTTGATGTCGGCGAGTGGCACAAATATCGTCATTGCCTTACTGAGAGGTGACGCGATGGTCGTCTCA
AACCTGGAACGCGCCACCGA

Downstream 100 bases:

>100_bases
CACGCCAAGCGGCGAGAGCTTTTTGGGCTCCTAGTGATCGCGCTCGGTCACCAGCTCCGTCACGGCCAGGAGGGCTCGCT
GGTATGGCGACTCCGGGAAC

Product: virulence associated protein C

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 103; Mature: 103

Protein sequence:

>103_residues
MFVPAIALGELYFGAAKSDRSTENAARLEEFAAGRTIIHCDIMVAREYGRLKQCLKQKGTPLPENDIWIAAAATCHGMTL
VTRDHHFDRIEGLQTSDWSTHPQ

Sequences:

>Translated_103_residues
MFVPAIALGELYFGAAKSDRSTENAARLEEFAAGRTIIHCDIMVAREYGRLKQCLKQKGTPLPENDIWIAAAATCHGMTL
VTRDHHFDRIEGLQTSDWSTHPQ
>Mature_103_residues
MFVPAIALGELYFGAAKSDRSTENAARLEEFAAGRTIIHCDIMVAREYGRLKQCLKQKGTPLPENDIWIAAAATCHGMTL
VTRDHHFDRIEGLQTSDWSTHPQ

Specific function: Unknown

COG id: COG1487

COG function: function code R; Predicted nucleic acid-binding protein, contains PIN domain

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: To B.nodosus virulence-associated protein C (vapC) [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002716
- InterPro:   IPR006596 [H]

Pfam domain/function: PF01850 PIN [H]

EC number: NA

Molecular weight: Translated: 11499; Mature: 11499

Theoretical pI: Translated: 6.67; Mature: 6.67

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.9 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
5.8 %Cys+Met (Translated Protein)
2.9 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
5.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFVPAIALGELYFGAAKSDRSTENAARLEEFAAGRTIIHCDIMVAREYGRLKQCLKQKGT
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEHEEHHHHHHHHHHHHHCCC
PLPENDIWIAAAATCHGMTLVTRDHHFDRIEGLQTSDWSTHPQ
CCCCCCEEEEEECCCCCEEEEECCCCCHHHCCCCCCCCCCCCC
>Mature Secondary Structure
MFVPAIALGELYFGAAKSDRSTENAARLEEFAAGRTIIHCDIMVAREYGRLKQCLKQKGT
CCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEEEHEEHHHHHHHHHHHHHCCC
PLPENDIWIAAAATCHGMTLVTRDHHFDRIEGLQTSDWSTHPQ
CCCCCCEEEEEECCCCCEEEEECCCCCHHHCCCCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]