Click here to switch to the map view.

The map label for this gene is yqjE [H]

Identifier: 116622450

GI number: 116622450

Start: 4236500

End: 4237765

Strand: Reverse

Name: yqjE [H]

Synonym: Acid_3348

Alternate gene names: 116622450

Gene position: 4237765-4236500 (Counterclockwise)

Preceding gene: 116622453

Following gene: 116622449

Centisome position: 42.52

GC content: 64.85

Gene sequence:

>1266_bases
ATGCTCAAACGGAACTCGCGCGCCGCTCTGCTCCTGTTTGCCGCCGCATCGCTCTCCGCGCAGACCAGCTGGTTTCAACC
CTCCCTGCTCGAAAAGCCCGAGGTGCGTAAGGCGCTGCAATCCGTGGACGAGCGTTCGGGTGCGATCGTGGACGAATGGA
TCCGGCTCGTGGAGATCCCCGCGCCCTCGCGCAAGGAGCAGGCTCGCGCCCGCTACATTCACGCCGAGATGGAGAAGCTC
GGCCTGAGCGAGATACGCGTTGACGATATGTCCAACGTCAGCGGCGTGCGCAAAGGAACCGGCGGCGGTCCTACCGTAGT
CTTCTGCGCCCACATGGATACGGTTTTCCCCGAGGGCACCGACCTCAAGGTCAAGCGCGAGAGCGACATTCTACGCGCCC
CCGGAGTCGGCGACGATACCTCAAACCTGATGGCCACGCTCGAAATGTTCCGCGCGCTGAATCGCGGCGGCGTGAAGACT
AAGGGCGACCTCATCTTCCTGGCGTCCGTCCAGGAGGAGTTGGGACTGCTGGGCGCCAAACACTGGCTGGAGGCCAGCGG
ATACAAGCCCGATATGTTCGTGGCCATCGACGTCTCCTCCACGCAGGTCTGGTACGGCGCGCTGCGCATCGACCAGTTCA
AGTTCTTCTACACGTCGCCCGGGGCGCACACGCTGGAAAGCCGCGGCGCGGCGAGCCCCGCGAAGGCGGTGGCCAAGGCG
ATCACCGCGCTGTACGAGATTCCGCTGCCTCCCATCGTCGAGGGCCTCGACTCTTTCAAGCTGCCCGTGATCAACGTCGG
CATGCTGGGCGGCGGCACCGTGATGAACGCGATCCCGCGCGAGGCCTGGTTCACCGTGGATCTGCGCTCGGTGGATAGCG
CGACTCAGGATCGCCTCGAGAGCGCCGTGGTCGCCACCGCGAAGCGCGCCGCCGATCAGGAGGGCGTGGGCTTCCGGATG
GAGCGCAATATGGGAATCGACTATTCTAAATCCCGGCCGCAGGAGGAGCGGCTCCATCAGCCGGTGGTGCAGACGGCGCT
CGCCACCAGCAACTACTTTCGACAATCGGGAACGCCGGAAATCCGCGCCACCGATGTAGGCTCGAACGATTCCAACATCG
CCGTCAGCCTGGGAATTCCCGCGGTCGCGGTGGGCGCGACCGTCGAGCGCATGCCGCACCGCCTCGAAGAGAATGCCGAC
GCGAGCAGCATCGTGCCCGGCATCAAATCGCTGCTCGCCCTGGCAGTGGCGTTGACCACACACTAA

Upstream 100 bases:

>100_bases
GCGCCGCGCGCGAGATTGTCGCCGCGCCGGCAAGTTGGATGAAGCTCCTCCGCCTAATATTGCTCACGCGCCAGAGTCTA
TCACACGGTAGAATTCAATA

Downstream 100 bases:

>100_bases
TTCGAGCCATTCGAAACCGCGCCGCCGCGCACCACGTCACAACACCGTAACTGGAGGTCCCGCGATGAAACTCGCTCTCG
CCGCGCTTGCGATCGGCACC

Product: peptidase M20

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 421; Mature: 421

Protein sequence:

>421_residues
MLKRNSRAALLLFAAASLSAQTSWFQPSLLEKPEVRKALQSVDERSGAIVDEWIRLVEIPAPSRKEQARARYIHAEMEKL
GLSEIRVDDMSNVSGVRKGTGGGPTVVFCAHMDTVFPEGTDLKVKRESDILRAPGVGDDTSNLMATLEMFRALNRGGVKT
KGDLIFLASVQEELGLLGAKHWLEASGYKPDMFVAIDVSSTQVWYGALRIDQFKFFYTSPGAHTLESRGAASPAKAVAKA
ITALYEIPLPPIVEGLDSFKLPVINVGMLGGGTVMNAIPREAWFTVDLRSVDSATQDRLESAVVATAKRAADQEGVGFRM
ERNMGIDYSKSRPQEERLHQPVVQTALATSNYFRQSGTPEIRATDVGSNDSNIAVSLGIPAVAVGATVERMPHRLEENAD
ASSIVPGIKSLLALAVALTTH

Sequences:

>Translated_421_residues
MLKRNSRAALLLFAAASLSAQTSWFQPSLLEKPEVRKALQSVDERSGAIVDEWIRLVEIPAPSRKEQARARYIHAEMEKL
GLSEIRVDDMSNVSGVRKGTGGGPTVVFCAHMDTVFPEGTDLKVKRESDILRAPGVGDDTSNLMATLEMFRALNRGGVKT
KGDLIFLASVQEELGLLGAKHWLEASGYKPDMFVAIDVSSTQVWYGALRIDQFKFFYTSPGAHTLESRGAASPAKAVAKA
ITALYEIPLPPIVEGLDSFKLPVINVGMLGGGTVMNAIPREAWFTVDLRSVDSATQDRLESAVVATAKRAADQEGVGFRM
ERNMGIDYSKSRPQEERLHQPVVQTALATSNYFRQSGTPEIRATDVGSNDSNIAVSLGIPAVAVGATVERMPHRLEENAD
ASSIVPGIKSLLALAVALTTH
>Mature_421_residues
MLKRNSRAALLLFAAASLSAQTSWFQPSLLEKPEVRKALQSVDERSGAIVDEWIRLVEIPAPSRKEQARARYIHAEMEKL
GLSEIRVDDMSNVSGVRKGTGGGPTVVFCAHMDTVFPEGTDLKVKRESDILRAPGVGDDTSNLMATLEMFRALNRGGVKT
KGDLIFLASVQEELGLLGAKHWLEASGYKPDMFVAIDVSSTQVWYGALRIDQFKFFYTSPGAHTLESRGAASPAKAVAKA
ITALYEIPLPPIVEGLDSFKLPVINVGMLGGGTVMNAIPREAWFTVDLRSVDSATQDRLESAVVATAKRAADQEGVGFRM
ERNMGIDYSKSRPQEERLHQPVVQTALATSNYFRQSGTPEIRATDVGSNDSNIAVSLGIPAVAVGATVERMPHRLEENAD
ASSIVPGIKSLLALAVALTTH

Specific function: Could be a peptidase [H]

COG id: COG2195

COG function: function code E; Di- and tripeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the peptidase M20A family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001261
- InterPro:   IPR010162
- InterPro:   IPR002933
- InterPro:   IPR011650 [H]

Pfam domain/function: PF07687 M20_dimer; PF01546 Peptidase_M20 [H]

EC number: NA

Molecular weight: Translated: 45546; Mature: 45546

Theoretical pI: Translated: 6.65; Mature: 6.65

Prosite motif: PS00318 HMG_COA_REDUCTASE_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKRNSRAALLLFAAASLSAQTSWFQPSLLEKPEVRKALQSVDERSGAIVDEWIRLVEIP
CCCCCCCCEEEEEEEHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCC
APSRKEQARARYIHAEMEKLGLSEIRVDDMSNVSGVRKGTGGGPTVVFCAHMDTVFPEGT
CCCHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCEEEEEEECHHHCCCCC
DLKVKRESDILRAPGVGDDTSNLMATLEMFRALNRGGVKTKGDLIFLASVQEELGLLGAK
CEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHH
HWLEASGYKPDMFVAIDVSSTQVWYGALRIDQFKFFYTSPGAHTLESRGAASPAKAVAKA
HHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCHHHHHCCCCCHHHHHHHH
ITALYEIPLPPIVEGLDSFKLPVINVGMLGGGTVMNAIPREAWFTVDLRSVDSATQDRLE
HHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEHHHHCHHHHHHHH
SAVVATAKRAADQEGVGFRMERNMGIDYSKSRPQEERLHQPVVQTALATSNYFRQSGTPE
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
IRATDVGSNDSNIAVSLGIPAVAVGATVERMPHRLEENADASSIVPGIKSLLALAVALTT
EEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
H
C
>Mature Secondary Structure
MLKRNSRAALLLFAAASLSAQTSWFQPSLLEKPEVRKALQSVDERSGAIVDEWIRLVEIP
CCCCCCCCEEEEEEEHHCCCCCCCCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHCCC
APSRKEQARARYIHAEMEKLGLSEIRVDDMSNVSGVRKGTGGGPTVVFCAHMDTVFPEGT
CCCHHHHHHHHHHHHHHHHCCHHHEECCCCCCCCCCCCCCCCCCEEEEEEECHHHCCCCC
DLKVKRESDILRAPGVGDDTSNLMATLEMFRALNRGGVKTKGDLIFLASVQEELGLLGAK
CEEEECCCCCEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHHHHHHHHH
HWLEASGYKPDMFVAIDVSSTQVWYGALRIDQFKFFYTSPGAHTLESRGAASPAKAVAKA
HHHHCCCCCCCEEEEEECCCCEEEEEEEEEEEEEEEEECCCCHHHHHCCCCCHHHHHHHH
ITALYEIPLPPIVEGLDSFKLPVINVGMLGGGTVMNAIPREAWFTVDLRSVDSATQDRLE
HHHHHHCCCCHHHHHHCCCCCCEEEEEECCCCHHHHHCCCCCEEEEEHHHHCHHHHHHHH
SAVVATAKRAADQEGVGFRMERNMGIDYSKSRPQEERLHQPVVQTALATSNYFRQSGTPE
HHHHHHHHHHCCCCCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
IRATDVGSNDSNIAVSLGIPAVAVGATVERMPHRLEENADASSIVPGIKSLLALAVALTT
EEEEECCCCCCCEEEEECCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHC
H
C

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8969508; 9384377 [H]