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The map label for this gene is xerD [C]

Identifier: 116622417

GI number: 116622417

Start: 4191613

End: 4192407

Strand: Reverse

Name: xerD [C]

Synonym: Acid_3313

Alternate gene names: 116622417

Gene position: 4192407-4191613 (Counterclockwise)

Preceding gene: 116622420

Following gene: 116622413

Centisome position: 42.07

GC content: 58.24

Gene sequence:

>795_bases
GTGACCCGTCTCAGAAAAATGATGCTGGAGGAACTCCAGCGTCGTAACTATGCCCAGAGTACCGTAAAAGGCTACCTGCG
AATTGTGCAGGACTTCGCCGAGCACTTCCACCAACAGCCCGACAAACTCGGACCCGAACATCTACGCCAGTACCAGGCGC
ACCTTTTTCGGGACAAGCATCTCAATGCGGGCACCGTACAGCAGTACGTGGCCGCTCTCCGTTTCTTCTTCAACAAAACT
TTGAAGCGGCACTACTTGCTGGATGACATCCCGATGCCCAAGCGGCATCGGAAGATGCCAGAGATCCTGAGCCCGGATGA
GGTCGCTCTACTGATCGGCTCGGCCAGTAATCTGTTGCACCAGACCATGCTCATGACGCTGTACTCCACTGGCGTGCGCC
GTGCCGAGTTGTGCCGGTTGAAATCCGCTGACATCGATAGCCAGCGCATGATGGTGCACATCCGTCAGGGCAAGGGCGGC
CACGACCGCGATGTGCCCTTGAGTCCCAGATTGCTGGAGACACTGCGTGTCTACTGGCGGTGGATGAAGCCCAAAACCTA
TCTCTTTCCCGGCACCGTGAATAACTGGCGAGCCGATGTCCCCATCACCACGAAAGTGCCTTGGGAGGCCTGCCGGCAAG
CCGCCCAGAGGGCCGGCATCACCAAGCATGTCTCGCCGCACACCTTGAGGCACTATGCCGCGTCCCGGACTATGCCGCGA
GGATCAGAACGAAGTGGTTCGAGGCCCTCAGAATATGAGGTCTGGTTGGACACCATCATTCGCCACGCGGCATAG

Upstream 100 bases:

>100_bases
GCACACAACAAAGCCGCTGGCGCGGCGGACGCTACGCGTGGTGGTGTGGGTAGAGTTCGGGCTTCGGCGGGCGTATTTTG
TGGGTCACAAGGAGGTCCCT

Downstream 100 bases:

>100_bases
TCCGGACGCTTGGGATTAGAGTTGTTTGAGGAAAGCCAGCAACTCGTCGTCCGGTTGAAAGCGTTTGGGAGCCCCTTTGA
CTGGATTGGTCTTGGCCAAG

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 264; Mature: 263

Protein sequence:

>264_residues
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKT
LKRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPR
GSERSGSRPSEYEVWLDTIIRHAA

Sequences:

>Translated_264_residues
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKT
LKRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGG
HDRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPR
GSERSGSRPSEYEVWLDTIIRHAA
>Mature_263_residues
TRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKHLNAGTVQQYVAALRFFFNKTL
KRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLHQTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGH
DRDVPLSPRLLETLRVYWRWMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPRG
SERSGSRPSEYEVWLDTIIRHAA

Specific function: May function as an integrase [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=252, Percent_Identity=28.1746031746032, Blast_Score=68, Evalue=6e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 30930; Mature: 30799

Theoretical pI: Translated: 10.81; Mature: 10.81

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
3.8 %Met     (Mature Protein)
4.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKH
CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LNAGTVQQYVAALRFFFNKTLKRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHEEEECCHHHHHH
QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWR
HHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPR
HCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
GSERSGSRPSEYEVWLDTIIRHAA
CCCCCCCCCHHHHHHHHHHHHHCC
>Mature Secondary Structure 
TRLRKMMLEELQRRNYAQSTVKGYLRIVQDFAEHFHQQPDKLGPEHLRQYQAHLFRDKH
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCC
LNAGTVQQYVAALRFFFNKTLKRHYLLDDIPMPKRHRKMPEILSPDEVALLIGSASNLLH
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHCCCCCCCCCCHHEEEECCHHHHHH
QTMLMTLYSTGVRRAELCRLKSADIDSQRMMVHIRQGKGGHDRDVPLSPRLLETLRVYWR
HHHHHHHHHHCCHHHHHHHHHCCCCCCHHHEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
WMKPKTYLFPGTVNNWRADVPITTKVPWEACRQAAQRAGITKHVSPHTLRHYAASRTMPR
HCCCCEEECCCCCCCCCCCCCEECCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCC
GSERSGSRPSEYEVWLDTIIRHAA
CCCCCCCCCHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]