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The map label for this gene is rimM

Identifier: 116621688

GI number: 116621688

Start: 3253658

End: 3254188

Strand: Reverse

Name: rimM

Synonym: Acid_2570

Alternate gene names: 116621688

Gene position: 3254188-3253658 (Counterclockwise)

Preceding gene: 116621689

Following gene: 116621687

Centisome position: 32.65

GC content: 61.58

Gene sequence:

>531_bases
GTGAGTGTGGAGGAGACCGGGTGGGTCACGGTTGCTCTTGTGGGAAAGACAAGGGGCAATCGTGGCGAAGTGACGGCCGT
TGTGCTGAGCAGCCGGCCCGAACGCTATCAGGATCTCCAGGAAGTGTTTCTCTTCGGCCCGGGCTTGCCTGAGGCCGGGG
AGAGGCGCGAGGTCGAAGAGGCTTGGTATCACCTCCAGACCCTGGTGTTGAAGTTCCGCGGAGTCGATACCATCTCAGAA
GCCGAATCCCTCTACGGCGCCGAAGTCCGCATCCCCGCCAGCCAGCGCATCTCCCTTGACGAAGGCGAATACTTCGAATC
CGACCTGATCGGGTGTGAGGTAGTGGACCGCCAGAGCGGCCAATCTCTGGGTAAGGTAAGCGCCTGGGACGATGGCGGAG
GCTCGGGCCTGCTGGTGGTAGGCGACCTGCTGATTCCCTTCGCCCGCGCCATCTGCGTGGAGATCAACCCTGCCGCGAAG
CGCATCACGGTAGAATTACCCGAAGGATTAAAGGATCTGAACCGCCCGTGA

Upstream 100 bases:

>100_bases
AGGTGATCGGCAAGCAGGGGCGTACGGCTCGTTCCATTCGTACGATTTTGGGTGCGGCGGGGATGAAGCTCAATCGACGG
TTTACGTTGGAAATTCTCGA

Downstream 100 bases:

>100_bases
TCTTCCATGTGCTGACGATCTTCCCCGAGTTTTTCGAGGGACCGTTCGCCCACGGCGTGGTCAAGCGCGCGAAGGATAGC
GGCATCCTCGACATCCGCAT

Product: 16S rRNA processing protein RimM

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 176; Mature: 175

Protein sequence:

>176_residues
MSVEETGWVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEEAWYHLQTLVLKFRGVDTISE
AESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSGQSLGKVSAWDDGGGSGLLVVGDLLIPFARAICVEINPAAK
RITVELPEGLKDLNRP

Sequences:

>Translated_176_residues
MSVEETGWVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEEAWYHLQTLVLKFRGVDTISE
AESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSGQSLGKVSAWDDGGGSGLLVVGDLLIPFARAICVEINPAAK
RITVELPEGLKDLNRP
>Mature_175_residues
SVEETGWVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEEAWYHLQTLVLKFRGVDTISEA
ESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSGQSLGKVSAWDDGGGSGLLVVGDLLIPFARAICVEINPAAKR
ITVELPEGLKDLNRP

Specific function: An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after rbfA dur

COG id: COG0806

COG function: function code J; RimM protein, required for 16S rRNA processing

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 PRC barrel domain

Homologues:

Organism=Escherichia coli, GI87082136, Length=135, Percent_Identity=32.5925925925926, Blast_Score=65, Evalue=3e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RIMM_SOLUE (Q024L7)

Other databases:

- EMBL:   CP000473
- RefSeq:   YP_823844.1
- ProteinModelPortal:   Q024L7
- SMR:   Q024L7
- STRING:   Q024L7
- GeneID:   4429240
- GenomeReviews:   CP000473_GR
- KEGG:   sus:Acid_2570
- NMPDR:   fig|234267.9.peg.2456
- eggNOG:   COG0806
- HOGENOM:   HBG703775
- OMA:   FITIARI
- PhylomeDB:   Q024L7
- ProtClustDB:   CLSK774866
- GO:   GO:0005840
- HAMAP:   MF_00014
- InterPro:   IPR011961
- InterPro:   IPR007903
- InterPro:   IPR011033
- InterPro:   IPR002676
- InterPro:   IPR009000
- TIGRFAMs:   TIGR02273

Pfam domain/function: PF05239 PRC; PF01782 RimM; SSF50346 PRCH_cytoplasmic; SSF50447 Translat_factor

EC number: NA

Molecular weight: Translated: 19246; Mature: 19115

Theoretical pI: Translated: 4.33; Mature: 4.33

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.1 %Cys     (Translated Protein)
0.6 %Met     (Translated Protein)
1.7 %Cys+Met (Translated Protein)
1.1 %Cys     (Mature Protein)
0.0 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSVEETGWVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEE
CCCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
AWYHLQTLVLKFRGVDTISEAESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSG
HHHHHHHHHHHHCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
QSLGKVSAWDDGGGSGLLVVGDLLIPFARAICVEINPAAKRITVELPEGLKDLNRP
CCCCCEECCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCEEEEEECCCCHHHCCCC
>Mature Secondary Structure 
SVEETGWVTVALVGKTRGNRGEVTAVVLSSRPERYQDLQEVFLFGPGLPEAGERREVEE
CCCCCCCEEEEEEECCCCCCCCEEEEEECCCCHHHHHHHHHHHCCCCCCCCCCHHHHHH
AWYHLQTLVLKFRGVDTISEAESLYGAEVRIPASQRISLDEGEYFESDLIGCEVVDRQSG
HHHHHHHHHHHHCCCCCHHHHHHHCCCEEECCCCCCCCCCCCCHHHHHCCCEEEECCCCC
QSLGKVSAWDDGGGSGLLVVGDLLIPFARAICVEINPAAKRITVELPEGLKDLNRP
CCCCCEECCCCCCCCCEEEHHHHHHHHHHHEEEEECCCCEEEEEECCCCHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA