Click here to switch to the map view.

The map label for this gene is smf [H]

Identifier: 116621518

GI number: 116621518

Start: 3058699

End: 3059874

Strand: Reverse

Name: smf [H]

Synonym: Acid_2400

Alternate gene names: 116621518

Gene position: 3059874-3058699 (Counterclockwise)

Preceding gene: 116621526

Following gene: 116621517

Centisome position: 30.7

GC content: 64.46

Gene sequence:

>1176_bases
ATGCAACCCCCCATTTTGAGCCGGGAAGAGGAGCTTCACTGGCTGGCATTGAAACTCGTCCCGGGTCTGGGAGCCAGAAC
CTCGGGTAAGCTGCTCGATCGCTTCCGCACCCCGCAAGCCATCTTTCGCGCCTCCCGCACCGAGCTCGAAGCCGCCGGAT
TGAGCGGCGCCGTCGCCCAATCCGTCGCCAGCGGCTGCACCTTCGAGGACGCCGCGCAGCAGCAGGAGCGCATGTTCCAA
TCGGGCGCCGTCCTCGTCACCATCGGCGATCCCCGCTACCCGCGACCCTTGCGCGAAATCTTCGACCCGCCCATTCTGCT
CTTCGCCCGCGGCCGCGTGGATCTCCTCCAGACCCTCGCGCTCGGCGTCGTCGGAACCCGCCGCCCGACCCCCTACGGCT
TGGCCGTCGCCGAACGCCTCGCAGCCGATCTGGCCCACGCCGGGCTGACCATCGTCAGCGGGATGGCGCGCGGCATCGAC
ACCGCGGCTCACAAAGGCGCCCTGGCCCGCGGCGGCGACACCATCGCCGTGCTCGGCTGCGGCGTTGACGTCGTCTACCC
CATGGAAAATCGCAAGCTTGCCGCCGACCTGGCCGTGAAAGGCCTGATCGTCGCCGAGTTCCCCATGGGCGCCGTCGCCT
TTCCCCAGAATTTCCCGATCCGCAACCGGATCATCAGCGGTTTGAGCCTCGGCGTTCTCGTCGTCGAAGGCGCCCAATAC
TCGGGCTCGGCGATCACCGCCAAGCTCGCCATCGACCAGGGCCGCGAGGTCTTCGCCTGCCCCGGCAACATCACCTCGAA
ACTGAGCTGGGGCCCTAACTTATTGATTAAACAGGGCGCGCGCCTCGTCCAGGATTGGAATGACGTGGTCGCCGAGCTGC
CTCCCGAATCGCGCCGGCAGCTCATCGATCGCGGCCGCCGCCGGCTCCTCGGTGACGGTTCTGCATCTTTGGACGAAACT
CAGGCATCATTATTAAGTGATCCGGCCCCGGAGCTGGGTACCGTCTCCCGCCGGACGCTCGAAGTTCTCCAGGTGGACAA
CTCCATACATTTGGACGATCTGCTTGAAAAGGTGGAAGATACGTCGCCGTCCGAACTCATCGCGGCGCTTTTTGAACTGG
AAATGCTCGGCTTGGTCAAGCAACTTCCGGGGAAGAACTTTGTTAAAGTGTGGTAA

Upstream 100 bases:

>100_bases
TCTCTCCCTGTGTAAGAGTTCTGTAATTCCAACAGGATAGGAGCTGCCGGTTGCGCCCCGAGCCCGCCGGCTGTTATCGT
CGTGGTCGAAATAGTCTGTA

Downstream 100 bases:

>100_bases
CGTCACTGGGTAATTCGCATTCATCAACACGCGGCGGAAGGGTGCCGCATTTCGAAAGTTTCCTATGCCAAAGGCTCTGG
TAATCGTGGAGTCGCCTGCC

Product: DNA protecting protein DprA

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 391; Mature: 391

Protein sequence:

>391_residues
MQPPILSREEELHWLALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAAGLSGAVAQSVASGCTFEDAAQQQERMFQ
SGAVLVTIGDPRYPRPLREIFDPPILLFARGRVDLLQTLALGVVGTRRPTPYGLAVAERLAADLAHAGLTIVSGMARGID
TAAHKGALARGGDTIAVLGCGVDVVYPMENRKLAADLAVKGLIVAEFPMGAVAFPQNFPIRNRIISGLSLGVLVVEGAQY
SGSAITAKLAIDQGREVFACPGNITSKLSWGPNLLIKQGARLVQDWNDVVAELPPESRRQLIDRGRRRLLGDGSASLDET
QASLLSDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVEDTSPSELIAALFELEMLGLVKQLPGKNFVKVW

Sequences:

>Translated_391_residues
MQPPILSREEELHWLALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAAGLSGAVAQSVASGCTFEDAAQQQERMFQ
SGAVLVTIGDPRYPRPLREIFDPPILLFARGRVDLLQTLALGVVGTRRPTPYGLAVAERLAADLAHAGLTIVSGMARGID
TAAHKGALARGGDTIAVLGCGVDVVYPMENRKLAADLAVKGLIVAEFPMGAVAFPQNFPIRNRIISGLSLGVLVVEGAQY
SGSAITAKLAIDQGREVFACPGNITSKLSWGPNLLIKQGARLVQDWNDVVAELPPESRRQLIDRGRRRLLGDGSASLDET
QASLLSDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVEDTSPSELIAALFELEMLGLVKQLPGKNFVKVW
>Mature_391_residues
MQPPILSREEELHWLALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAAGLSGAVAQSVASGCTFEDAAQQQERMFQ
SGAVLVTIGDPRYPRPLREIFDPPILLFARGRVDLLQTLALGVVGTRRPTPYGLAVAERLAADLAHAGLTIVSGMARGID
TAAHKGALARGGDTIAVLGCGVDVVYPMENRKLAADLAVKGLIVAEFPMGAVAFPQNFPIRNRIISGLSLGVLVVEGAQY
SGSAITAKLAIDQGREVFACPGNITSKLSWGPNLLIKQGARLVQDWNDVVAELPPESRRQLIDRGRRRLLGDGSASLDET
QASLLSDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVEDTSPSELIAALFELEMLGLVKQLPGKNFVKVW

Specific function: Unknown

COG id: COG0758

COG function: function code LU; Predicted Rossmann fold nucleotide-binding protein involved in DNA uptake

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the smf family [H]

Homologues:

Organism=Escherichia coli, GI48994932, Length=293, Percent_Identity=39.2491467576792, Blast_Score=168, Evalue=6e-43,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003488
- InterPro:   IPR010994 [H]

Pfam domain/function: PF02481 DNA_processg_A [H]

EC number: NA

Molecular weight: Translated: 41999; Mature: 41999

Theoretical pI: Translated: 6.54; Mature: 6.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQPPILSREEELHWLALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAAGLSGAVAQ
CCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
SVASGCTFEDAAQQQERMFQSGAVLVTIGDPRYPRPLREIFDPPILLFARGRVDLLQTLA
HHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHH
LGVVGTRRPTPYGLAVAERLAADLAHAGLTIVSGMARGIDTAAHKGALARGGDTIAVLGC
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
GVDVVYPMENRKLAADLAVKGLIVAEFPMGAVAFPQNFPIRNRIISGLSLGVLVVEGAQY
CEEEEECCCCCCHHHHHHHHCEEEEECCCCCEECCCCCCHHHHHHHCCCEEEEEEECCCC
SGSAITAKLAIDQGREVFACPGNITSKLSWGPNLLIKQGARLVQDWNDVVAELPPESRRQ
CCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LIDRGRRRLLGDGSASLDETQASLLSDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVED
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
TSPSELIAALFELEMLGLVKQLPGKNFVKVW
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC
>Mature Secondary Structure
MQPPILSREEELHWLALKLVPGLGARTSGKLLDRFRTPQAIFRASRTELEAAGLSGAVAQ
CCCCCCCCCHHHHEEEEECCCCCCCCCCHHHHHHHCCHHHHHHHHHHHHHHCCCCHHHHH
SVASGCTFEDAAQQQERMFQSGAVLVTIGDPRYPRPLREIFDPPILLFARGRVDLLQTLA
HHHCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHCCCCEEEEECCHHHHHHHHH
LGVVGTRRPTPYGLAVAERLAADLAHAGLTIVSGMARGIDTAAHKGALARGGDTIAVLGC
HHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEC
GVDVVYPMENRKLAADLAVKGLIVAEFPMGAVAFPQNFPIRNRIISGLSLGVLVVEGAQY
CEEEEECCCCCCHHHHHHHHCEEEEECCCCCEECCCCCCHHHHHHHCCCEEEEEEECCCC
SGSAITAKLAIDQGREVFACPGNITSKLSWGPNLLIKQGARLVQDWNDVVAELPPESRRQ
CCCEEEEEEEECCCCEEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCHHHHH
LIDRGRRRLLGDGSASLDETQASLLSDPAPELGTVSRRTLEVLQVDNSIHLDDLLEKVED
HHHHHHHHCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHCC
TSPSELIAALFELEMLGLVKQLPGKNFVKVW
CCHHHHHHHHHHHHHHHHHHHCCCCCCEEEC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]