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The map label for this gene is degT [H]

Identifier: 116621456

GI number: 116621456

Start: 2982001

End: 2983131

Strand: Direct

Name: degT [H]

Synonym: Acid_2338

Alternate gene names: 116621456

Gene position: 2982001-2983131 (Clockwise)

Preceding gene: 116621453

Following gene: 116621457

Centisome position: 29.92

GC content: 69.41

Gene sequence:

>1131_bases
ATGGGAGCTGATTCACCGAAACCAGTCGCGCTGAATGACTTACTGAGACAAACCAGGGCGCTGGAGGCCGAGCTCTCCAC
CAGCGTGAATCGGGTCCTGGCGAGCGGCTGGTACATACTGGGCCGCGAGTGCGCGGCATTCGAAGCGGAGTTTGCGGCGT
ACTGCGGCGCGGGGCATTGCGTGACGGTCGCCAACGGCACGGACGCGCTCGAACTGGCGCTGCGGAGCCTGGGAATCGGC
CCCGGCGACCTGGTGGCGACCGTGGCCAACGCCGGCGGCTACAGCACCACGGCTATCCGTGCGGCGGGCGGCGAACCTTT
CTATATCGATATCGACCCGGCGACCATGAACATGTCGGCGGCCGACCTGGCGGCGCGGCTGACGCCGCGCGTGCGGGCCG
TGATCGCGACCCATCTCTATGGCCGGATGGCGGACCTGCCGGCGCTCCTGGCGGTCACCGGCGGCGCGGGAATCCCGCTG
GTGGAAGATTGCGCGCAGGCCCACGGGGCGGCGATTGGCGGCCGGAAGGCGGGCAGCTGGGGCGCGCTGGCCTGCTTCAG
TTTCTATCCGACCAAAAACCTGGGAGCGCTGGGCGATGGCGGCGCGGTCACGACCAGCGACGCGCAGCTCGCGGACAGGG
TGCGGTCGCTGCGGCAGTACGGGTGGAGCGGCAAATACCGCTGCGCCGAATATGGCCGCAACAGCCGCATGGACGAGATG
CAGGCCGCCATCCTGCGAGCCAAGCTGCCGCACCTGGATGGCTGGAACGCGCGCCGGCGGGAGATCGCCGCGCGATACAA
CGCGGCCCTGGCCGGACAGCCGGTGGAGTGCCCGCGGGATTTGGGCGAAGGCAGCGTCGCGCACCTGTACGTGATTCGCT
GCGAGGATCGCGACCGGGTGCGGGCGGAGCTGAGCGCCGGCGGCATCGCGACCGACATCCATTACCCGATTCCGGATCAC
CTGCAGGAGGCGGCGCGCGATACACCGGCGGCCCGGGTTGCGCTTCCGGCCACGGAGCGCGCGGCGCGCGAGATCCTGAC
CCTGCCCTGCTATGCCGAGTTGGAGGACGAGGAAATACGCGCCGTATGCGCGGAGTTAGAGGCGCTCGGAAAGGAGTCCC
GGGTTGGTTAG

Upstream 100 bases:

>100_bases
CGGCCCCCCGTCGCGATCGCAGGTGGCGAGCGTGAGCGTGCTCTCGGACTTCAGCAGATCAACGGAAGTCATACACTATG
CAGGTTATAATACGGACTCC

Downstream 100 bases:

>100_bases
CGAGGGCTTTTACCGGCACGAGACGGCAATGGTGGAAAGCCGTTCGGTGGGCCCTGGAACGCGCATCTGGGCATTCACGC
ATATCCTGCCCGGAGCGGTA

Product: DegT/DnrJ/EryC1/StrS aminotransferase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 376; Mature: 375

Protein sequence:

>376_residues
MGADSPKPVALNDLLRQTRALEAELSTSVNRVLASGWYILGRECAAFEAEFAAYCGAGHCVTVANGTDALELALRSLGIG
PGDLVATVANAGGYSTTAIRAAGGEPFYIDIDPATMNMSAADLAARLTPRVRAVIATHLYGRMADLPALLAVTGGAGIPL
VEDCAQAHGAAIGGRKAGSWGALACFSFYPTKNLGALGDGGAVTTSDAQLADRVRSLRQYGWSGKYRCAEYGRNSRMDEM
QAAILRAKLPHLDGWNARRREIAARYNAALAGQPVECPRDLGEGSVAHLYVIRCEDRDRVRAELSAGGIATDIHYPIPDH
LQEAARDTPAARVALPATERAAREILTLPCYAELEDEEIRAVCAELEALGKESRVG

Sequences:

>Translated_376_residues
MGADSPKPVALNDLLRQTRALEAELSTSVNRVLASGWYILGRECAAFEAEFAAYCGAGHCVTVANGTDALELALRSLGIG
PGDLVATVANAGGYSTTAIRAAGGEPFYIDIDPATMNMSAADLAARLTPRVRAVIATHLYGRMADLPALLAVTGGAGIPL
VEDCAQAHGAAIGGRKAGSWGALACFSFYPTKNLGALGDGGAVTTSDAQLADRVRSLRQYGWSGKYRCAEYGRNSRMDEM
QAAILRAKLPHLDGWNARRREIAARYNAALAGQPVECPRDLGEGSVAHLYVIRCEDRDRVRAELSAGGIATDIHYPIPDH
LQEAARDTPAARVALPATERAAREILTLPCYAELEDEEIRAVCAELEALGKESRVG
>Mature_375_residues
GADSPKPVALNDLLRQTRALEAELSTSVNRVLASGWYILGRECAAFEAEFAAYCGAGHCVTVANGTDALELALRSLGIGP
GDLVATVANAGGYSTTAIRAAGGEPFYIDIDPATMNMSAADLAARLTPRVRAVIATHLYGRMADLPALLAVTGGAGIPLV
EDCAQAHGAAIGGRKAGSWGALACFSFYPTKNLGALGDGGAVTTSDAQLADRVRSLRQYGWSGKYRCAEYGRNSRMDEMQ
AAILRAKLPHLDGWNARRREIAARYNAALAGQPVECPRDLGEGSVAHLYVIRCEDRDRVRAELSAGGIATDIHYPIPDHL
QEAARDTPAARVALPATERAAREILTLPCYAELEDEEIRAVCAELEALGKESRVG

Specific function: This membrane protein may function as a sensor protein and may transfer the signal of environmental stimuli to the regulatory region of target genes to activate or repress transcription of the genes [H]

COG id: COG0399

COG function: function code M; Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the degT/dnrJ/eryC1 family [H]

Homologues:

Organism=Escherichia coli, GI145693159, Length=382, Percent_Identity=30.3664921465969, Blast_Score=138, Evalue=6e-34,
Organism=Escherichia coli, GI2367285, Length=329, Percent_Identity=28.2674772036474, Blast_Score=114, Evalue=1e-26,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000653
- InterPro:   IPR015424
- InterPro:   IPR015421
- InterPro:   IPR015422 [H]

Pfam domain/function: PF01041 DegT_DnrJ_EryC1 [H]

EC number: NA

Molecular weight: Translated: 39792; Mature: 39661

Theoretical pI: Translated: 5.69; Mature: 5.69

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGADSPKPVALNDLLRQTRALEAELSTSVNRVLASGWYILGRECAAFEAEFAAYCGAGHC
CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCE
VTVANGTDALELALRSLGIGPGDLVATVANAGGYSTTAIRAAGGEPFYIDIDPATMNMSA
EEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHCCCHH
ADLAARLTPRVRAVIATHLYGRMADLPALLAVTGGAGIPLVEDCAQAHGAAIGGRKAGSW
HHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC
GALACFSFYPTKNLGALGDGGAVTTSDAQLADRVRSLRQYGWSGKYRCAEYGRNSRMDEM
CEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHHHH
QAAILRAKLPHLDGWNARRREIAARYNAALAGQPVECPRDLGEGSVAHLYVIRCEDRDRV
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEEEECCCHHH
RAELSAGGIATDIHYPIPDHLQEAARDTPAARVALPATERAAREILTLPCYAELEDEEIR
HHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHEECCCCCCCCHHHHH
AVCAELEALGKESRVG
HHHHHHHHHCCCCCCC
>Mature Secondary Structure 
GADSPKPVALNDLLRQTRALEAELSTSVNRVLASGWYILGRECAAFEAEFAAYCGAGHC
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCHHHHHHHHHHHHCCCCCE
VTVANGTDALELALRSLGIGPGDLVATVANAGGYSTTAIRAAGGEPFYIDIDPATMNMSA
EEEECCCHHHHHHHHHCCCCCHHHHHHHHCCCCCCEEEEEECCCCEEEEEECCHHCCCHH
ADLAARLTPRVRAVIATHLYGRMADLPALLAVTGGAGIPLVEDCAQAHGAAIGGRKAGSW
HHHHHHHCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCC
GALACFSFYPTKNLGALGDGGAVTTSDAQLADRVRSLRQYGWSGKYRCAEYGRNSRMDEM
CEEEEEEECCCCCCCCCCCCCCEECCHHHHHHHHHHHHHHCCCCCEEHHHCCCCCCHHHH
QAAILRAKLPHLDGWNARRREIAARYNAALAGQPVECPRDLGEGSVAHLYVIRCEDRDRV
HHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHCCCCCEEEEEEEEECCCHHH
RAELSAGGIATDIHYPIPDHLQEAARDTPAARVALPATERAAREILTLPCYAELEDEEIR
HHHHCCCCEEEECCCCCHHHHHHHHCCCCCCEEECCCHHHHHHHHEECCCCCCCCHHHHH
AVCAELEALGKESRVG
HHHHHHHHHCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 2104607 [H]