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The map label for this gene is 116620852

Identifier: 116620852

GI number: 116620852

Start: 2149228

End: 2150952

Strand: Reverse

Name: 116620852

Synonym: Acid_1733

Alternate gene names: NA

Gene position: 2150952-2149228 (Counterclockwise)

Preceding gene: 116620854

Following gene: 116620850

Centisome position: 21.58

GC content: 59.48

Gene sequence:

>1725_bases
ATGGACGGCCGTAAGAACAAAGTAAGCGCCCAGGCGAAGTCGTACACAAGTGGAGTTTTGTTTAGCTGGCACGTGGTGTG
GCTGGTGCTGGCCGCGCTGATTGTGGGCGCGAGCCTTTACTCTTCCGCGCTGCACGGCCGATTCATCTTCGACGACGACG
CGCTGCCATTTCAGCAAGGCATTCGAAGCGCATCGTTACGGGTCTGGCTGGCGGGCGTCCGCCCCTTCCTGATGTTTTCG
TACTGGCTGAATTACCGGATCTCCGGCAGCGATCCTTACAGTTACCACGTGTTCAACCTTCTCATTCATGCGGTGAATAC
CGGGTTGGTATTCGTGGTGTTGTTGCGCCTGCTCGGGCTGGCGGAATGGGACTCAGCAAAGCGGCACTCGGCGGCCGTGT
TGGGGGCGACAGTATTTCTGATCCACCCGTTAGCGACAGAATCAGTAAGCTACGTCGCGGGGCGCTCGGAAAGCCTGGCG
GCTTTGTTCCTGCTGCTGGCCTACGCCGTGTTCCTGGACGGTTACAACTCGCCGATTTCCTGGGGGCGTTCGGCAGTGGT
AATGACGCTATTCGGGATCGCGGCGGCCACGAAGGAGAATGCGGTGGCGCTGGCCGGATTGCTGCTGCTGACGGATCTTT
CCTGGCCGAGGCCTTACTCGATCGAAGGACTGCGCAGGAATTACAAGGTGTATCTGCTGATGACTCCCGGTGTTGCGCTG
GCTGCGGTTTGGGTGGGACGGGTGCTAAGCACGGCGGAGACGGCGGGCTTCTCGTTGAAGGAGGTCACCTGGTACCAATA
TGGGTTTACGCAGGCGCGGGCAGTTTTCGAATACCTTCGATTGGCGTTTTTCCCGGTGGGCCAGTCCGTGGATCATGACT
TTCCGGTTTCGCACGCCGTTACCGAATACGGAGCGATCTTCTATCTGGTCCTGCTGGCAGCGTTGATAACGGCAGCAATC
CTGGTACGGCACAGGTATCCTCTGGCTACTTTCGGTTTTCTGATGTTTTTGATCCTGCTGGCGCCGACTTCGTCGGTAAT
TCCGATTGCGGATCCGTTAGTCGAGCGGCGGATGTACGTGCCGATAGTGGGCCTGATCCTGGTGGCATGCCAGGCGGTGA
AGGGCCTGAGATGGTCGAACGGAGCGGTAGCGGTGCTGCTGGCCATCCTTGCGTTATTCGGAGGGCTTTGCTATCAGCGG
AATCATTTGTGGGGCAAACCGGAGCAGGTTTGGGCGAGAGCAGCCGAGGATTCAACACGGAAGGGAAGGCCGTTTCTGGG
TTTGGCGGAGAGTCTGATTGCGGAGAACCGGTGCGCGGAAGCCATACCGTTCCTGGAACGGGGCGAACAGCTGATGCCGC
ACGACTTTGCGATTGAGGTGGCGTGGGGCAAGGTCTTGGAGTGCCAGGGCAAGTTGGAGGACGCACTCCAACGGCTGGAG
CGTGCCGCAGCAATCCTGCCGAATTCTTTCGTGTACCAGTTGATCGGCCTGCTGTATGGCGAGATGGGGAAAAAGGAGGA
GGCCGGCGCAGCCCTGCGTAAAGCCGAGCAACTCGGGCCGGGCAACGTATCCGCGCACTGCGCGCTGGGTCTCTGGTACG
AGTCCATGGACGATGCCGCGGCGGCCGAGCGGGAATATCGCGAGGCCCTTTCCATAGATGCATACAGCACCGAGGCTCAA
ATGGGACTGGACAGAATCCATGTGAGCACGGCAGCGCGAGAGTGA

Upstream 100 bases:

>100_bases
ATGGTATCTGCGAGTCCCTTGGCCCATGAACTTCGTAGTTGCCTGTTTCCTTCTGCACAGCCGCCAGAACCGCTTGCTGG
TAGGCTGAAAACCTTTACGC

Downstream 100 bases:

>100_bases
GGCGGCGCCGGACTTTGAAGGAAAACCGGCAGAAGACACCACGCAGGGCGGCAGGAACGGCATTTTTGTGGCACACCTTC
CGGACGAGCGGCGGCCGGTC

Product: hypothetical protein

Products: NA

Alternate protein names: Tetratricopeptide TPR_2 Repeat Protein; Tetratricopeptide Repeat-Containing Protein; TPR Domain-Containing Protein

Number of amino acids: Translated: 574; Mature: 574

Protein sequence:

>574_residues
MDGRKNKVSAQAKSYTSGVLFSWHVVWLVLAALIVGASLYSSALHGRFIFDDDALPFQQGIRSASLRVWLAGVRPFLMFS
YWLNYRISGSDPYSYHVFNLLIHAVNTGLVFVVLLRLLGLAEWDSAKRHSAAVLGATVFLIHPLATESVSYVAGRSESLA
ALFLLLAYAVFLDGYNSPISWGRSAVVMTLFGIAAATKENAVALAGLLLLTDLSWPRPYSIEGLRRNYKVYLLMTPGVAL
AAVWVGRVLSTAETAGFSLKEVTWYQYGFTQARAVFEYLRLAFFPVGQSVDHDFPVSHAVTEYGAIFYLVLLAALITAAI
LVRHRYPLATFGFLMFLILLAPTSSVIPIADPLVERRMYVPIVGLILVACQAVKGLRWSNGAVAVLLAILALFGGLCYQR
NHLWGKPEQVWARAAEDSTRKGRPFLGLAESLIAENRCAEAIPFLERGEQLMPHDFAIEVAWGKVLECQGKLEDALQRLE
RAAAILPNSFVYQLIGLLYGEMGKKEEAGAALRKAEQLGPGNVSAHCALGLWYESMDDAAAAEREYREALSIDAYSTEAQ
MGLDRIHVSTAARE

Sequences:

>Translated_574_residues
MDGRKNKVSAQAKSYTSGVLFSWHVVWLVLAALIVGASLYSSALHGRFIFDDDALPFQQGIRSASLRVWLAGVRPFLMFS
YWLNYRISGSDPYSYHVFNLLIHAVNTGLVFVVLLRLLGLAEWDSAKRHSAAVLGATVFLIHPLATESVSYVAGRSESLA
ALFLLLAYAVFLDGYNSPISWGRSAVVMTLFGIAAATKENAVALAGLLLLTDLSWPRPYSIEGLRRNYKVYLLMTPGVAL
AAVWVGRVLSTAETAGFSLKEVTWYQYGFTQARAVFEYLRLAFFPVGQSVDHDFPVSHAVTEYGAIFYLVLLAALITAAI
LVRHRYPLATFGFLMFLILLAPTSSVIPIADPLVERRMYVPIVGLILVACQAVKGLRWSNGAVAVLLAILALFGGLCYQR
NHLWGKPEQVWARAAEDSTRKGRPFLGLAESLIAENRCAEAIPFLERGEQLMPHDFAIEVAWGKVLECQGKLEDALQRLE
RAAAILPNSFVYQLIGLLYGEMGKKEEAGAALRKAEQLGPGNVSAHCALGLWYESMDDAAAAEREYREALSIDAYSTEAQ
MGLDRIHVSTAARE
>Mature_574_residues
MDGRKNKVSAQAKSYTSGVLFSWHVVWLVLAALIVGASLYSSALHGRFIFDDDALPFQQGIRSASLRVWLAGVRPFLMFS
YWLNYRISGSDPYSYHVFNLLIHAVNTGLVFVVLLRLLGLAEWDSAKRHSAAVLGATVFLIHPLATESVSYVAGRSESLA
ALFLLLAYAVFLDGYNSPISWGRSAVVMTLFGIAAATKENAVALAGLLLLTDLSWPRPYSIEGLRRNYKVYLLMTPGVAL
AAVWVGRVLSTAETAGFSLKEVTWYQYGFTQARAVFEYLRLAFFPVGQSVDHDFPVSHAVTEYGAIFYLVLLAALITAAI
LVRHRYPLATFGFLMFLILLAPTSSVIPIADPLVERRMYVPIVGLILVACQAVKGLRWSNGAVAVLLAILALFGGLCYQR
NHLWGKPEQVWARAAEDSTRKGRPFLGLAESLIAENRCAEAIPFLERGEQLMPHDFAIEVAWGKVLECQGKLEDALQRLE
RAAAILPNSFVYQLIGLLYGEMGKKEEAGAALRKAEQLGPGNVSAHCALGLWYESMDDAAAAEREYREALSIDAYSTEAQ
MGLDRIHVSTAARE

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Homo sapiens, GI224809432, Length=572, Percent_Identity=22.027972027972, Blast_Score=92, Evalue=1e-18,
Organism=Homo sapiens, GI118766330, Length=591, Percent_Identity=21.65820642978, Blast_Score=73, Evalue=7e-13,
Organism=Homo sapiens, GI118766328, Length=591, Percent_Identity=21.65820642978, Blast_Score=73, Evalue=9e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 63122; Mature: 63122

Theoretical pI: Translated: 7.66; Mature: 7.66

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDGRKNKVSAQAKSYTSGVLFSWHVVWLVLAALIVGASLYSSALHGRFIFDDDALPFQQG
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHC
IRSASLRVWLAGVRPFLMFSYWLNYRISGSDPYSYHVFNLLIHAVNTGLVFVVLLRLLGL
CHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEWDSAKRHSAAVLGATVFLIHPLATESVSYVAGRSESLAALFLLLAYAVFLDGYNSPIS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
WGRSAVVMTLFGIAAATKENAVALAGLLLLTDLSWPRPYSIEGLRRNYKVYLLMTPGVAL
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECCCHHH
AAVWVGRVLSTAETAGFSLKEVTWYQYGFTQARAVFEYLRLAFFPVGQSVDHDFPVSHAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
TEYGAIFYLVLLAALITAAILVRHRYPLATFGFLMFLILLAPTSSVIPIADPLVERRMYV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
PIVGLILVACQAVKGLRWSNGAVAVLLAILALFGGLCYQRNHLWGKPEQVWARAAEDSTR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
KGRPFLGLAESLIAENRCAEAIPFLERGEQLMPHDFAIEVAWGKVLECQGKLEDALQRLE
CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHH
RAAAILPNSFVYQLIGLLYGEMGKKEEAGAALRKAEQLGPGNVSAHCALGLWYESMDDAA
HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
AAEREYREALSIDAYSTEAQMGLDRIHVSTAARE
HHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHCCC
>Mature Secondary Structure
MDGRKNKVSAQAKSYTSGVLFSWHVVWLVLAALIVGASLYSSALHGRFIFDDDALPFQQG
CCCCCCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCCCHHHC
IRSASLRVWLAGVRPFLMFSYWLNYRISGSDPYSYHVFNLLIHAVNTGLVFVVLLRLLGL
CHHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
AEWDSAKRHSAAVLGATVFLIHPLATESVSYVAGRSESLAALFLLLAYAVFLDGYNSPIS
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCC
WGRSAVVMTLFGIAAATKENAVALAGLLLLTDLSWPRPYSIEGLRRNYKVYLLMTPGVAL
CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCCCCCHHHHCCCCEEEEEECCCHHH
AAVWVGRVLSTAETAGFSLKEVTWYQYGFTQARAVFEYLRLAFFPVGQSVDHDFPVSHAV
HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHH
TEYGAIFYLVLLAALITAAILVRHRYPLATFGFLMFLILLAPTSSVIPIADPLVERRMYV
HHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHH
PIVGLILVACQAVKGLRWSNGAVAVLLAILALFGGLCYQRNHLWGKPEQVWARAAEDSTR
HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHCCCCC
KGRPFLGLAESLIAENRCAEAIPFLERGEQLMPHDFAIEVAWGKVLECQGKLEDALQRLE
CCCCHHHHHHHHHHHHHHHHHCCHHHCCCCCCCCCEEEEEECCHHHHHCCHHHHHHHHHH
RAAAILPNSFVYQLIGLLYGEMGKKEEAGAALRKAEQLGPGNVSAHCALGLWYESMDDAA
HHHHHCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCEEEEHHHHHHHHHH
AAEREYREALSIDAYSTEAQMGLDRIHVSTAARE
HHHHHHHHHHCCCCCCCHHHHCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA