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The map label for this gene is ybjY [C]

Identifier: 116620775

GI number: 116620775

Start: 2052349

End: 2053689

Strand: Direct

Name: ybjY [C]

Synonym: Acid_1656

Alternate gene names: 116620775

Gene position: 2052349-2053689 (Clockwise)

Preceding gene: 116620774

Following gene: 116620776

Centisome position: 20.59

GC content: 63.53

Gene sequence:

>1341_bases
ATGGACGAGGAACTCAAAAGTCTCCAGATCAATCGCTCCAAACGGCGTTCCACCGAGCCGTCCCGCTGGGCCGCCCGCTG
GATCGTCACTGGCATCGTCGTCTTCCTCCTGCTCGGCGCCTGGCGCGTCCTCTCCTCCGACAAATTCAACTCCGCCCCCG
AGGTCGAAGTCACGCGCGTCCGCTCCATAAGCGCCGCCAGCGCCCCCGAGGGCGTCATCCTGAACGCGACCGGCTACATC
GTCGCCGCCCACAAGATCGAAGTGGCCGCCAAAGTTGTCGGCAAGGTCAAGTGGATCGGCGTCGATAAGGGGGACCACGT
CACGGAAGGCCAGGTCCTCGTCCGCCTGGAAGACGACGAATATCAGGCCCAGCTCCTTCAGGCGAAAGGCAACCTCGTCA
GCCTTCAGGCCAAACTCGCCGAAGCCACCAACGGCTCTCGCCCCGAAGAGGTCGCGGCTGCCCTGGCTAACGTCCATACC
GCCGAATCCGACCTCGATAACGCCAAAGTCACCCTCGACCGCAACAGGCTCCTCCTCAAGAACGGTGTGGTCGCTCAGCA
GGTGGTAGACGACGCCCAGGCCCGCTACGACAACGCCCTCCACCGCGTCGCGTCTCTCCAGAAATCCTTCGAACTCGTAA
AACTCGGGCCCCGCCAGGAGCAGATCGATTCCCTCCGCGGCCAGGTCGATCAGGCCCGCGGGGCTCTCGTCTACGCCGAA
ACCAACCTCGCCAACACCATCATCCGCGCCCCCGTCACCGGCACCATCCTCGAACGTGCCGTCGAAAAGGGCGAGTTCGT
CACCACCAGCTTCGTCGGCGACCGCGGCGCTAAAGGTTACGTAGTCTCCCTCGCCGATCTCAACGATCTCGAAGTTGAAC
TCGATATCGCACAAAACGATTTCGCCAAGCTCCACGCCGGCCAGCACGGCGCGGTCACCACTGACGCCTTCCCCGACCGC
AAGTACGATGGCTTCATCAAAGAGATCTCTCCCGAAGCCAACCGCCAGAAGGCCACTGTCCAGATCAAGGTCAAGGTGGC
CCAGCCCGATAACTATCTGCGCCCCGAAATGAACGCCAGCGTCGCCTTCGCCTCAGATGCCAACTCCGACGCGCCGGCGG
GCGCCTCCGCCAAACCCGTCGTGATCGTGCCGTCCACCGCTCTCCGGGATGGCGCCGTGTTCGTTTTCCTCGATGGCAAA
GCCGTGCGCCGCTCCGTCAAAACCGGCGCCACCAGCCCGCAAGGCATCCGTGTGGAAGAAGGACTGGTCGGCGGCGAAGA
TCTCATCCTCAACCCCCCGACTGCCCTGAAGAACGGCGACAAGGTTCGCCAGAAGGCCTGA

Upstream 100 bases:

>100_bases
TAATTCTAGGTGCGGCCGGCGGACTCTTCCCCGCCGGAAACGCCGCCCGCAAGGAAATTCTCACCGCCTTACGCGAAATC
TAGGCATCCAATCATTCCCT

Downstream 100 bases:

>100_bases
ATCCTATGAGCGACGTCATCATCGAAACCCGCAGCCTTACCAAGGAGTACGTCCGCGACGAATTTCAGGTACTCGCGCTC
AAAGAGGTCAGTCTCCAGAT

Product: RND family efflux transporter MFP subunit

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 446; Mature: 446

Protein sequence:

>446_residues
MDEELKSLQINRSKRRSTEPSRWAARWIVTGIVVFLLLGAWRVLSSDKFNSAPEVEVTRVRSISAASAPEGVILNATGYI
VAAHKIEVAAKVVGKVKWIGVDKGDHVTEGQVLVRLEDDEYQAQLLQAKGNLVSLQAKLAEATNGSRPEEVAAALANVHT
AESDLDNAKVTLDRNRLLLKNGVVAQQVVDDAQARYDNALHRVASLQKSFELVKLGPRQEQIDSLRGQVDQARGALVYAE
TNLANTIIRAPVTGTILERAVEKGEFVTTSFVGDRGAKGYVVSLADLNDLEVELDIAQNDFAKLHAGQHGAVTTDAFPDR
KYDGFIKEISPEANRQKATVQIKVKVAQPDNYLRPEMNASVAFASDANSDAPAGASAKPVVIVPSTALRDGAVFVFLDGK
AVRRSVKTGATSPQGIRVEEGLVGGEDLILNPPTALKNGDKVRQKA

Sequences:

>Translated_446_residues
MDEELKSLQINRSKRRSTEPSRWAARWIVTGIVVFLLLGAWRVLSSDKFNSAPEVEVTRVRSISAASAPEGVILNATGYI
VAAHKIEVAAKVVGKVKWIGVDKGDHVTEGQVLVRLEDDEYQAQLLQAKGNLVSLQAKLAEATNGSRPEEVAAALANVHT
AESDLDNAKVTLDRNRLLLKNGVVAQQVVDDAQARYDNALHRVASLQKSFELVKLGPRQEQIDSLRGQVDQARGALVYAE
TNLANTIIRAPVTGTILERAVEKGEFVTTSFVGDRGAKGYVVSLADLNDLEVELDIAQNDFAKLHAGQHGAVTTDAFPDR
KYDGFIKEISPEANRQKATVQIKVKVAQPDNYLRPEMNASVAFASDANSDAPAGASAKPVVIVPSTALRDGAVFVFLDGK
AVRRSVKTGATSPQGIRVEEGLVGGEDLILNPPTALKNGDKVRQKA
>Mature_446_residues
MDEELKSLQINRSKRRSTEPSRWAARWIVTGIVVFLLLGAWRVLSSDKFNSAPEVEVTRVRSISAASAPEGVILNATGYI
VAAHKIEVAAKVVGKVKWIGVDKGDHVTEGQVLVRLEDDEYQAQLLQAKGNLVSLQAKLAEATNGSRPEEVAAALANVHT
AESDLDNAKVTLDRNRLLLKNGVVAQQVVDDAQARYDNALHRVASLQKSFELVKLGPRQEQIDSLRGQVDQARGALVYAE
TNLANTIIRAPVTGTILERAVEKGEFVTTSFVGDRGAKGYVVSLADLNDLEVELDIAQNDFAKLHAGQHGAVTTDAFPDR
KYDGFIKEISPEANRQKATVQIKVKVAQPDNYLRPEMNASVAFASDANSDAPAGASAKPVVIVPSTALRDGAVFVFLDGK
AVRRSVKTGATSPQGIRVEEGLVGGEDLILNPPTALKNGDKVRQKA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Periplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0194 family [H]

Homologues:

Organism=Escherichia coli, GI87081796, Length=425, Percent_Identity=24, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1787013, Length=296, Percent_Identity=28.3783783783784, Blast_Score=89, Evalue=4e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006143
- InterPro:   IPR022936 [H]

Pfam domain/function: PF00529 HlyD [H]

EC number: NA

Molecular weight: Translated: 48062; Mature: 48062

Theoretical pI: Translated: 7.19; Mature: 7.19

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.4 %Met     (Translated Protein)
0.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.4 %Met     (Mature Protein)
0.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDEELKSLQINRSKRRSTEPSRWAARWIVTGIVVFLLLGAWRVLSSDKFNSAPEVEVTRV
CCCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
RSISAASAPEGVILNATGYIVAAHKIEVAAKVVGKVKWIGVDKGDHVTEGQVLVRLEDDE
EEECCCCCCCCEEEECCCEEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEECCH
YQAQLLQAKGNLVSLQAKLAEATNGSRPEEVAAALANVHTAESDLDNAKVTLDRNRLLLK
HHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEE
NGVVAQQVVDDAQARYDNALHRVASLQKSFELVKLGPRQEQIDSLRGQVDQARGALVYAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCEEEEEE
TNLANTIIRAPVTGTILERAVEKGEFVTTSFVGDRGAKGYVVSLADLNDLEVELDIAQND
CCCCHHEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCC
FAKLHAGQHGAVTTDAFPDRKYDGFIKEISPEANRQKATVQIKVKVAQPDNYLRPEMNAS
HHHHCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCE
VAFASDANSDAPAGASAKPVVIVPSTALRDGAVFVFLDGKAVRRSVKTGATSPQGIRVEE
EEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECC
GLVGGEDLILNPPTALKNGDKVRQKA
CCCCCCCEEECCCHHHCCCCHHHCCC
>Mature Secondary Structure
MDEELKSLQINRSKRRSTEPSRWAARWIVTGIVVFLLLGAWRVLSSDKFNSAPEVEVTRV
CCCHHHHHHCCCHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEE
RSISAASAPEGVILNATGYIVAAHKIEVAAKVVGKVKWIGVDKGDHVTEGQVLVRLEDDE
EEECCCCCCCCEEEECCCEEEEEEHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEEECCH
YQAQLLQAKGNLVSLQAKLAEATNGSRPEEVAAALANVHTAESDLDNAKVTLDRNRLLLK
HHHHHHHHCCCEEEEHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCCCEEEEECCEEEEE
NGVVAQQVVDDAQARYDNALHRVASLQKSFELVKLGPRQEQIDSLRGQVDQARGALVYAE
CCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHCCEEEEEE
TNLANTIIRAPVTGTILERAVEKGEFVTTSFVGDRGAKGYVVSLADLNDLEVELDIAQND
CCCCHHEEECCCHHHHHHHHHHCCCEEEEEECCCCCCCEEEEEEECCCCEEEEEEECCCC
FAKLHAGQHGAVTTDAFPDRKYDGFIKEISPEANRQKATVQIKVKVAQPDNYLRPEMNAS
HHHHCCCCCCCEECCCCCCCCCCCHHHHCCCCCCCCEEEEEEEEEEECCCCCCCCCCCCE
VAFASDANSDAPAGASAKPVVIVPSTALRDGAVFVFLDGKAVRRSVKTGATSPQGIRVEE
EEEECCCCCCCCCCCCCCCEEEECCCCCCCCEEEEEECCHHHHHHHHCCCCCCCCEEECC
GLVGGEDLILNPPTALKNGDKVRQKA
CCCCCCCEEECCCHHHCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA