Click here to switch to the map view.

The map label for this gene is yebA [C]

Identifier: 116620655

GI number: 116620655

Start: 1883915

End: 1885285

Strand: Reverse

Name: yebA [C]

Synonym: Acid_1535

Alternate gene names: 116620655

Gene position: 1885285-1883915 (Counterclockwise)

Preceding gene: 116620656

Following gene: 116620653

Centisome position: 18.92

GC content: 60.83

Gene sequence:

>1371_bases
GTGAAAGCACTCATTGGTATTCTTGTTCTCGCGGCCATCGCCTTGGCTGCGCTTTTTACGATGTCTTCCAGTACGGCTTT
GGCGATTGCGCCCGAGGTCAAGATAGTTGGGCAAAGCACGCCCGTCGCGGTGCAAATCACCAATCCACACGGCGTGCGCA
AGGTGAACGCGTACATCGAGCAGAATGGCACGCGGATGCCGCTGCTGGAGCAGTCCGCACCCTCGCATCGTGTATTCCTG
CGCCGCAATCAGCCTGCGCAGACGGTGAAGTTCGACGCCGGCAAGATCAAGGCGGCCGGGCTGAAGGAGGGCGACGCACG
CATTGTAGTGGAGGCCGTGTCGGACGATTTCCGCGGCCGCACCGATTCGGCGTCGGCAAACGTGAAAGTGGTGCTGGCGC
CGCCGCGCGTGACGCCGGACGACGCACAGCATTATATTAATCAGGGCGGCATGGAACTGGCCGTGATGACTCCCGGCGGC
TCGTGGAATGAAGCCGGCGTCAAGGTCGGCAAGTACAGTTTCCGCAGCTTCGCGCTGCCGGGGCATCCGGAGCAGCGCTT
CGCAATGTTCGCGTATCCATGGGATCTGCCCGACAACGTGACCCCGATGGTGTTCGCGCGTAATGCGGCGGGGACGGAGG
CCACCGCGCAGTTCTGGTTCAAGCTGTTCCCCAAGAAGTTCCGCGTGCGCGACTTCCCCATCGACGACGCGCTGATTTCG
AAGCTGGTGAACCAGATCGACCCGGGCGGGACGCTCGCGCCGGGGCCGGACATGCTCTCGCGCTTCCTCAAGATCAACGG
AGAGATGCGGCGGCAGAACAACCAGCAACTGGCCGATTTGCGTTTCAAGACGGAAGAGAAGATTTTGTGGAATGGTCCGT
TCCTCCACTGGGGCAAAGAGGAATCGATGTTCGCGGACGTGCGCAACTACATCTATAAGGGCAAGAAGGTGGACCAGCAG
GTACACCTCGGCTTCGACCTCTCCGATACGATGAACGCCCCGGTGCATGTGGCCAACGACGGACGCGTGGTGTGGGCGAA
CGACCTGGGCATCTACGGAAATTGCGTGGTGGTGGATCACGGCTACGCGCTGCAATCGATCTACGGACATTTGAACCGGA
TCGATGTGAAGGTGGGGGATATGGTGAAGAAGAACCAGAGCCTCGGCGTCGCGGGCGCGACCGGCATGGCCGGCGGAGTG
CACGTGCACTTCAGCATGCAGATTGATGGCGTGCAGGTGAATCCGATGGAGTGGTGGGACGAGCACTGGATCCACGACCG
GATTATGAGCAAGCTAGATCCGAACGCCGTAAAGAGTGTAAGACCGGTGGAAGTGAGCAGCGCACCGAAGGCGAAGAGGC
GACGGCGGTAA

Upstream 100 bases:

>100_bases
TGGTGTTCCCCGATGAGGGGCACTGGATTCTTAAGCCGCAGAATAGCGTGGTCTGGTACAAGACGTTCATCGATTGGTTA
GATAGCTGGGTCAAAAAATA

Downstream 100 bases:

>100_bases
GAGAGGGTGCGCTCAGTTTGGGGGCGAGGTCAGGCATCGTGGCATGCCTCTGCGGGGAGCGGGCCGCACTGAGGCGGGGC
GAGCCGGCTGAAAGCCGGCT

Product: peptidase M23B

Products: NA

Alternate protein names: Peptidase M; M24/M37 Family Peptidase; M23 Peptidase Domain Protein; M23 Peptidase Domain-Containing Protein; Zinc Metalloendopeptidase; Tyrosyl-TRNA Synthetase; Peptidoglycan-Specific Endopeptidase; Periplasmic Protein

Number of amino acids: Translated: 456; Mature: 456

Protein sequence:

>456_residues
MKALIGILVLAAIALAALFTMSSSTALAIAPEVKIVGQSTPVAVQITNPHGVRKVNAYIEQNGTRMPLLEQSAPSHRVFL
RRNQPAQTVKFDAGKIKAAGLKEGDARIVVEAVSDDFRGRTDSASANVKVVLAPPRVTPDDAQHYINQGGMELAVMTPGG
SWNEAGVKVGKYSFRSFALPGHPEQRFAMFAYPWDLPDNVTPMVFARNAAGTEATAQFWFKLFPKKFRVRDFPIDDALIS
KLVNQIDPGGTLAPGPDMLSRFLKINGEMRRQNNQQLADLRFKTEEKILWNGPFLHWGKEESMFADVRNYIYKGKKVDQQ
VHLGFDLSDTMNAPVHVANDGRVVWANDLGIYGNCVVVDHGYALQSIYGHLNRIDVKVGDMVKKNQSLGVAGATGMAGGV
HVHFSMQIDGVQVNPMEWWDEHWIHDRIMSKLDPNAVKSVRPVEVSSAPKAKRRRR

Sequences:

>Translated_456_residues
MKALIGILVLAAIALAALFTMSSSTALAIAPEVKIVGQSTPVAVQITNPHGVRKVNAYIEQNGTRMPLLEQSAPSHRVFL
RRNQPAQTVKFDAGKIKAAGLKEGDARIVVEAVSDDFRGRTDSASANVKVVLAPPRVTPDDAQHYINQGGMELAVMTPGG
SWNEAGVKVGKYSFRSFALPGHPEQRFAMFAYPWDLPDNVTPMVFARNAAGTEATAQFWFKLFPKKFRVRDFPIDDALIS
KLVNQIDPGGTLAPGPDMLSRFLKINGEMRRQNNQQLADLRFKTEEKILWNGPFLHWGKEESMFADVRNYIYKGKKVDQQ
VHLGFDLSDTMNAPVHVANDGRVVWANDLGIYGNCVVVDHGYALQSIYGHLNRIDVKVGDMVKKNQSLGVAGATGMAGGV
HVHFSMQIDGVQVNPMEWWDEHWIHDRIMSKLDPNAVKSVRPVEVSSAPKAKRRRR
>Mature_456_residues
MKALIGILVLAAIALAALFTMSSSTALAIAPEVKIVGQSTPVAVQITNPHGVRKVNAYIEQNGTRMPLLEQSAPSHRVFL
RRNQPAQTVKFDAGKIKAAGLKEGDARIVVEAVSDDFRGRTDSASANVKVVLAPPRVTPDDAQHYINQGGMELAVMTPGG
SWNEAGVKVGKYSFRSFALPGHPEQRFAMFAYPWDLPDNVTPMVFARNAAGTEATAQFWFKLFPKKFRVRDFPIDDALIS
KLVNQIDPGGTLAPGPDMLSRFLKINGEMRRQNNQQLADLRFKTEEKILWNGPFLHWGKEESMFADVRNYIYKGKKVDQQ
VHLGFDLSDTMNAPVHVANDGRVVWANDLGIYGNCVVVDHGYALQSIYGHLNRIDVKVGDMVKKNQSLGVAGATGMAGGV
HVHFSMQIDGVQVNPMEWWDEHWIHDRIMSKLDPNAVKSVRPVEVSSAPKAKRRRR

Specific function: Could Be Involved In Cell Wall Degradation Or Formation. [C]

COG id: COG0739

COG function: function code M; Membrane proteins related to metalloendopeptidases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI87081989, Length=95, Percent_Identity=35.7894736842105, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: 3.4.24.- [C]

Molecular weight: Translated: 50429; Mature: 50429

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKALIGILVLAAIALAALFTMSSSTALAIAPEVKIVGQSTPVAVQITNPHGVRKVNAYIE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHH
QNGTRMPLLEQSAPSHRVFLRRNQPAQTVKFDAGKIKAAGLKEGDARIVVEAVSDDFRGR
CCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCCCEEEEEEECCCCCCC
TDSASANVKVVLAPPRVTPDDAQHYINQGGMELAVMTPGGSWNEAGVKVGKYSFRSFALP
CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCEEECCC
GHPEQRFAMFAYPWDLPDNVTPMVFARNAAGTEATAQFWFKLFPKKFRVRDFPIDDALIS
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHH
KLVNQIDPGGTLAPGPDMLSRFLKINGEMRRQNNQQLADLRFKTEEKILWNGPFLHWGKE
HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCHHHEEECCCCEEEECCCEEECCCC
ESMFADVRNYIYKGKKVDQQVHLGFDLSDTMNAPVHVANDGRVVWANDLGIYGNCVVVDH
HHHHHHHHHHHHCCCCCCCEEEECCCCHHCCCCCEEEECCCEEEEEECCCEEEEEEEEEC
GYALQSIYGHLNRIDVKVGDMVKKNQSLGVAGATGMAGGVHVHFSMQIDGVQVNPMEWWD
CHHHHHHHHCCEEEEEEHHHHHHCCCCCCEECCCCCCCCEEEEEEEEECCEEECCHHHHH
EHWIHDRIMSKLDPNAVKSVRPVEVSSAPKAKRRRR
HHHHHHHHHHHCCCHHHHCCCCEECCCCCCHHHCCC
>Mature Secondary Structure
MKALIGILVLAAIALAALFTMSSSTALAIAPEVKIVGQSTPVAVQITNPHGVRKVNAYIE
CHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCEEEEECCCCEEEEECCCCCCEEEEHHHH
QNGTRMPLLEQSAPSHRVFLRRNQPAQTVKFDAGKIKAAGLKEGDARIVVEAVSDDFRGR
CCCCCCCEECCCCCCCEEEEECCCCCCEEEECCCEEEECCCCCCCCEEEEEEECCCCCCC
TDSASANVKVVLAPPRVTPDDAQHYINQGGMELAVMTPGGSWNEAGVKVGKYSFRSFALP
CCCCCCCEEEEEECCCCCHHHHHHHHCCCCCEEEEECCCCCCCCCCEEEECCCCEEECCC
GHPEQRFAMFAYPWDLPDNVTPMVFARNAAGTEATAQFWFKLFPKKFRVRDFPIDDALIS
CCCCCCEEEEEECCCCCCCCCCEEEEECCCCCHHHHHHHHHHCCHHHEEECCCCCHHHHH
KLVNQIDPGGTLAPGPDMLSRFLKINGEMRRQNNQQLADLRFKTEEKILWNGPFLHWGKE
HHHHHCCCCCCCCCCHHHHHHHHHCCCHHHHCCCCCHHHEEECCCCEEEECCCEEECCCC
ESMFADVRNYIYKGKKVDQQVHLGFDLSDTMNAPVHVANDGRVVWANDLGIYGNCVVVDH
HHHHHHHHHHHHCCCCCCCEEEECCCCHHCCCCCEEEECCCEEEEEECCCEEEEEEEEEC
GYALQSIYGHLNRIDVKVGDMVKKNQSLGVAGATGMAGGVHVHFSMQIDGVQVNPMEWWD
CHHHHHHHHCCEEEEEEHHHHHHCCCCCCEECCCCCCCCEEEEEEEEECCEEECCHHHHH
EHWIHDRIMSKLDPNAVKSVRPVEVSSAPKAKRRRR
HHHHHHHHHHHCCCHHHHCCCCEECCCCCCHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA