| Definition | Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome. |
|---|---|
| Accession | NC_008536 |
| Length | 9,965,640 |
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The map label for this gene is pcrA [H]
Identifier: 116620297
GI number: 116620297
Start: 1443242
End: 1445608
Strand: Direct
Name: pcrA [H]
Synonym: Acid_1174
Alternate gene names: 116620297
Gene position: 1443242-1445608 (Clockwise)
Preceding gene: 116620296
Following gene: 116620298
Centisome position: 14.48
GC content: 60.37
Gene sequence:
>2367_bases ATGGATTTCCTCAAAGGGCTAAATGCGCAACAGCGCGAAGCCGTAACTCACATCGACGGACCCCTGCTGATTCTAGCCGG AGCGGGAAGCGGTAAGACCCGCGTTATCACCCACCGGATCGCCCACATCATCACGTCCCGGCACGTTCCACCGTCAGCTG TGCTGGCAGTGACTTTCACCAATAAGGCTGCCAAGGAAATGCGGGAACGGGTGGCCGCGCTGCTCGAGGATGTGCCGCTG GATTCGATGCCCACGGTCAGCACCTTTCATTCCTTTTGCGTGCGCCTGCTGCGCCGGGATGGCGACCCGCTGGCGCGGGT TCGTCCCGGATTCACCCGGCGCTTCACGATCTACGACGACGAAGATCAGCTGCAGATCATCAAAGCCGCCTACCGCACGC TGGGTTTCGACGAGAAAGAGTTCATGCAGTACCGCGCGGCTCTCTCCAGAATCAGCCACGCCAAGAACACCAAGGTTACT CCGCAAGAAATGTTCCGGGACGCGGTCAACAAGGAGAGCGAAGCCGTCGCCGCGTTGTACGAGGAGTACGAGAAGGCTCT GCGCAACGCCAACGCGCTGGACTTCGACGACCTGCTGCTGGAGGCCGTGCGCCTGCTGCGCACTGACGACGCCACGCGCG AGAGCTGGAACCGGCGCCTGAGCTACGTCATGATCGACGAGTATCAGGACACCAATCGCAGCCAGTATGAACTGATGCGC CTGCTCACCGAGCAGCACCAAAACGTGTGTGTCGTGGGTGACGAGGACCAGTCGATTTATAGCTGGCGCGGCGCGGACAT CAAAAACATTCTGGATTTCGAGAAGGATTATCCGCGCGCCAAGACCATCCGGCTGGAACAGAACTACCGCTCCACGAAGA ATATTCTGGCGGCGGCCGGCGCCGTGGTGGAGAACAACAAGGCGCGAAAGGGCAAGAAGCTCTGGACCGAATCCGACTCG GGCGAGCTGCTCGGTCTTTATGCCGGGTACGATTCGGAGAACGAAGCCCTCTTCATCGCCGACACCACGGAGAAGTACCT GGCGTCGAACCCGGGCGACCATGTCGCGATTCTGTACCGTACGAATTCGCAATCGCGCCAGATCGAAGAAGCGCTGCGCC GTTATGGCCGCAAGTACAACGTAGTCGGCGGCTTCAGCTTTTACCAGCGGGCGGAAATCAAGGACATGGTCGCGTATCTC AAGCTCGCTTCCTCGAATGTGGATTCGGTGAGCCTGATGCGGGTGATCAATACGCCGGCGCGCGGCATCGGACGGACCAC GGTAGAGCAGATCGAGCGCTACGGCCGGGATCACGGGCTCAACCTGTGGGAATCGATCGAGCGCATCATCGACGATCAGC AGCTTTCCACGCGCTCGCAATCCTCCCTGGTGGTCTTCCGCAACCTGATCCAGGAGCTCTCGCTGGTGGCGAGCACTTCT TCGCTGCCGGACCTGATCCGCCACATTCTGGAGCGCACCGGCTATCGCAAGATGCTGCAGCAGGAGAAGACGCCGGAATC CGAGACGCGGCTGGAAAACCTGGATGAATTGATCAACGCCGCCGCCGACGCTCACGAGCGCGGCGAAACCCTGGGCGACT TTCTGGATAATGCGGCACTCGTGGCCGATGTCGATTCGTATGACGAGCAATCGCCCGTCACGCTGATGACGCTTCACAAT GCCAAGGGCCTGGAGTTTCCGCTGGTATTTCTGAGCGGTATGGAACTAGGCCTGTTCCCGCACAGCCGGTCGATGAATTC CGAGGAAGCGCTGGAGGAAGAGCGCCGCCTCTGCTACGTGGGTATGACCCGCGCGCGTAAGAAGCTGGTGCTTACCTGGG CGAAGATGCGGCGGCGATTTGGGGGCGGGGAACAGGAGCGTTCCACCGCGAGCTGGTTCCTGAGCGAGGTGCCGGAGAAT TTGATCTTTAACCTCGGCCCGCGCGACGAACCGGGCGAGGTCGATCTTTATTCGGAGCGCTACGATGTGCGGCAGTCTGC CCGGCGCAACACGTATACGGGGAAGACCTACAACTCGCTCGACAATATCTCGCAGTTTTTCGGTGAGCGCGGCCTGCCGT TCAAGCCGGGGCAAAGCGCTCCGGCGCCGCCGAAGCCGGATTTGCGGACGCCGCCGCAGTATCCGCGGCCCATCGGCAGC GCTCCGATGCCGATGAAACAGGTTCCACCACCGCCGCCTCCCCGCAAAGGGGCGCGCGCGGGAATGACCGTGGAACATCC GAAATACGGCACAGGTACCGTGGTACGGCGCGAAGGGGAGGGTGATGATGCTAAGATCACAGTTAACTTTCCTCGCTACG GATTAAAGAAATTAGTCGAAAAGTACGCAGGATTGAAAAGAAACTGA
Upstream 100 bases:
>100_bases CTCCGCTGCGCTCACCCGTGCCTACCCGATAACCAACTGCAACTGCGGGAATCGGGGCTTTGAGGCGGCAGCATGGTAAA ATTGGGAGTTCCCCTTTTCC
Downstream 100 bases:
>100_bases TGAACACGAAGACTGTTACCGACAAAGTTGAACGCAAGAAGCTGAAGCGCACTGCGCGTAAGAAGGCGGCCCCCAAGCCC AAGCGCGCCTCCGGCGTAGC
Product: ATP-dependent DNA helicase Rep
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 788; Mature: 788
Protein sequence:
>788_residues MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFTNKAAKEMRERVAALLEDVPL DSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVT PQEMFRDAVNKESEAVAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDATRESWNRRLSYVMIDEYQDTNRSQYELMR LLTEQHQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPRAKTIRLEQNYRSTKNILAAAGAVVENNKARKGKKLWTESDS GELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYRTNSQSRQIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYL KLASSNVDSVSLMRVINTPARGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSSLVVFRNLIQELSLVASTS SLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAADAHERGETLGDFLDNAALVADVDSYDEQSPVTLMTLHN AKGLEFPLVFLSGMELGLFPHSRSMNSEEALEEERRLCYVGMTRARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPEN LIFNLGPRDEPGEVDLYSERYDVRQSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGS APMPMKQVPPPPPPRKGARAGMTVEHPKYGTGTVVRREGEGDDAKITVNFPRYGLKKLVEKYAGLKRN
Sequences:
>Translated_788_residues MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFTNKAAKEMRERVAALLEDVPL DSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVT PQEMFRDAVNKESEAVAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDATRESWNRRLSYVMIDEYQDTNRSQYELMR LLTEQHQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPRAKTIRLEQNYRSTKNILAAAGAVVENNKARKGKKLWTESDS GELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYRTNSQSRQIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYL KLASSNVDSVSLMRVINTPARGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSSLVVFRNLIQELSLVASTS SLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAADAHERGETLGDFLDNAALVADVDSYDEQSPVTLMTLHN AKGLEFPLVFLSGMELGLFPHSRSMNSEEALEEERRLCYVGMTRARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPEN LIFNLGPRDEPGEVDLYSERYDVRQSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGS APMPMKQVPPPPPPRKGARAGMTVEHPKYGTGTVVRREGEGDDAKITVNFPRYGLKKLVEKYAGLKRN >Mature_788_residues MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFTNKAAKEMRERVAALLEDVPL DSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDDEDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVT PQEMFRDAVNKESEAVAALYEEYEKALRNANALDFDDLLLEAVRLLRTDDATRESWNRRLSYVMIDEYQDTNRSQYELMR LLTEQHQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPRAKTIRLEQNYRSTKNILAAAGAVVENNKARKGKKLWTESDS GELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYRTNSQSRQIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYL KLASSNVDSVSLMRVINTPARGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSSLVVFRNLIQELSLVASTS SLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAADAHERGETLGDFLDNAALVADVDSYDEQSPVTLMTLHN AKGLEFPLVFLSGMELGLFPHSRSMNSEEALEEERRLCYVGMTRARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPEN LIFNLGPRDEPGEVDLYSERYDVRQSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGS APMPMKQVPPPPPPRKGARAGMTVEHPKYGTGTVVRREGEGDDAKITVNFPRYGLKKLVEKYAGLKRN
Specific function: DNA helicase used for plasmid rolling-circle replication and also involved in UV repair [H]
COG id: COG0210
COG function: function code L; Superfamily I DNA and RNA helicases
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 uvrD-like helicase C-terminal domain [H]
Homologues:
Organism=Escherichia coli, GI2367296, Length=650, Percent_Identity=41.2307692307692, Blast_Score=458, Evalue=1e-130, Organism=Escherichia coli, GI48994965, Length=653, Percent_Identity=36.7534456355283, Blast_Score=380, Evalue=1e-106, Organism=Escherichia coli, GI1787196, Length=381, Percent_Identity=24.9343832020997, Blast_Score=98, Evalue=2e-21, Organism=Saccharomyces cerevisiae, GI6322369, Length=746, Percent_Identity=26.5415549597855, Blast_Score=208, Evalue=3e-54, Organism=Saccharomyces cerevisiae, GI6324477, Length=653, Percent_Identity=21.2863705972435, Blast_Score=110, Evalue=9e-25,
Paralogues:
None
Copy number: 3000 [C]
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005751 - InterPro: IPR013986 - InterPro: IPR014017 - InterPro: IPR000212 - InterPro: IPR014016 [H]
Pfam domain/function: PF00580 UvrD-helicase [H]
EC number: =3.6.4.12 [H]
Molecular weight: Translated: 89408; Mature: 89408
Theoretical pI: Translated: 8.06; Mature: 8.06
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.4 %Cys (Translated Protein) 2.3 %Met (Translated Protein) 2.7 %Cys+Met (Translated Protein) 0.4 %Cys (Mature Protein) 2.3 %Met (Mature Protein) 2.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFT CCHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC NKAAKEMRERVAALLEDVPLDSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDD CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECC EDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVTPQEMFRDAVNKESEAVAALY CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH EEYEKALRNANALDFDDLLLEAVRLLRTDDATRESWNRRLSYVMIDEYQDTNRSQYELMR HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCCCCCHHHHHHH LLTEQHQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPRAKTIRLEQNYRSTKNILAAAG HHHHHCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH AVVENNKARKGKKLWTESDSGELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYR HHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCCCEEEEEEE TNSQSRQIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYLKLASSNVDSVSLMRVINTPA CCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC RGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSSLVVFRNLIQELSLVASTS CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHCCC SLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAADAHERGETLGDFLDNAAL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE VADVDSYDEQSPVTLMTLHNAKGLEFPLVFLSGMELGLFPHSRSMNSEEALEEERRLCYV EEECCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHEEHH GMTRARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPENLIFNLGPRDEPGEVDLYSER HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHEEECCCCCCCCCEEEHHHH YDVRQSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGS HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APMPMKQVPPPPPPRKGARAGMTVEHPKYGTGTVVRREGEGDDAKITVNFPRYGLKKLVE CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHH KYAGLKRN HHCCCCCC >Mature Secondary Structure MDFLKGLNAQQREAVTHIDGPLLILAGAGSGKTRVITHRIAHIITSRHVPPSAVLAVTFT CCHHCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEEC NKAAKEMRERVAALLEDVPLDSMPTVSTFHSFCVRLLRRDGDPLARVRPGFTRRFTIYDD CHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCHHHCCCCCCEEEEEECC EDQLQIIKAAYRTLGFDEKEFMQYRAALSRISHAKNTKVTPQEMFRDAVNKESEAVAALY CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHCCHHHHHHHHH EEYEKALRNANALDFDDLLLEAVRLLRTDDATRESWNRRLSYVMIDEYQDTNRSQYELMR HHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHCCEEEEEEECCCCCCCHHHHHHH LLTEQHQNVCVVGDEDQSIYSWRGADIKNILDFEKDYPRAKTIRLEQNYRSTKNILAAAG HHHHHCCCEEEECCCCCCEEEECCCCHHHHHHHHHCCCCCEEEEEHHHHHHHHHHHHHHH AVVENNKARKGKKLWTESDSGELLGLYAGYDSENEALFIADTTEKYLASNPGDHVAILYR HHHCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEECHHHHHHCCCCCEEEEEEE TNSQSRQIEEALRRYGRKYNVVGGFSFYQRAEIKDMVAYLKLASSNVDSVSLMRVINTPA CCCHHHHHHHHHHHHCCEEEEEECHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCC RGIGRTTVEQIERYGRDHGLNLWESIERIIDDQQLSTRSQSSLVVFRNLIQELSLVASTS CCCCHHHHHHHHHHCCCCCCCHHHHHHHHHCHHHHHHCCHHHHHHHHHHHHHHHHHHCCC SLPDLIRHILERTGYRKMLQQEKTPESETRLENLDELINAAADAHERGETLGDFLDNAAL HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE VADVDSYDEQSPVTLMTLHNAKGLEFPLVFLSGMELGLFPHSRSMNSEEALEEERRLCYV EEECCCCCCCCCEEEEEEECCCCCCCHHHHHCCCCEECCCCCCCCCHHHHHHHHHHEEHH GMTRARKKLVLTWAKMRRRFGGGEQERSTASWFLSEVPENLIFNLGPRDEPGEVDLYSER HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCHHHEEECCCCCCCCCEEEHHHH YDVRQSARRNTYTGKTYNSLDNISQFFGERGLPFKPGQSAPAPPKPDLRTPPQYPRPIGS HHHHHHHHCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC APMPMKQVPPPPPPRKGARAGMTVEHPKYGTGTVVRREGEGDDAKITVNFPRYGLKKLVE CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCEEEECCCCCCCEEEEECCHHHHHHHHH KYAGLKRN HHCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 9701819; 9384377 [H]