BacMap

Definition	Candidatus Solibacter usitatus Ellin6076 chromosome, complete genome.
Accession	NC_008536
Length	9,965,640

Click here to switch to the map view.

The map label for this gene is lcfB [H]

Identifier: 116620124

GI number: 116620124

Start: 1238149

End: 1239555

Strand: Reverse

Name: lcfB [H]

Synonym: Acid_0997

Alternate gene names: 116620124

Gene position: 1239555-1238149 (Counterclockwise)

Preceding gene: 116620125

Following gene: 116620123

Centisome position: 12.44

GC content: 65.17

Gene sequence:

>1407_bases
GTGAACCTCACGCATCTCTTCGATCTCTCCCTGTCCGGCCGCCGCGACACCGGCGCGCTCGAATTCCAGGACCGCTGCTA
CACGTTCGGCGAACTGGATTCACGCAGCAACCGCCTCGCCAATCTGCTGCTCCACCGCGGACTCAAGACCGGCGACCGAC
TCTGCTGCTACCTCGCCAACTGCGTCGAGATGATCGATCTCTACCTCGCCTGCGTCAAGCTCGGCGTGATTTTCGTCCCC
ATCAATATCCTCTACCGCGATCGCGAGATGCACCACATCCTCTCCGACGCCGAGCCGATCGCGCTCATCGCCGCCGAGCC
CTTCCCTGCCCCGGTCCCCATCTGGCGCGCCGCCGATCTCGCCGCCGAAGCCGCGTCATTCCCCGACGCACGCCCCACTA
TCGCGCTCGATGGCGATACTCCGGCCGGTATCATCTACACTTCCGGCACCACAGGCGCTTCCAAAGGGGCCGTCCTCACT
CACAACAATTTCGCGGCCAACGCCATCACGCTCCTCACCTGCTGGCAGATCACTGCCGCCGACCGTTTCCTGCTCGCGCT
CCCGCTCTTCCACGTTCACGCCCTCGGCAACGGACTTCACTGCTGGCTAGCCAGCGGCTGCCGCATGCGCCTCCTCGAAC
GCTTCGAACACCAGAAGGCCGCCGCCGAGTTTCTCGATTTCCGCCCGACCCTCTTCTTCGGCGTCCCCACCATCTACGTC
CGCCTTCTCGACATCCCGCCCGACGCCGCCCGCGAAATCGGCGCCGCCATGCGCCTCTTCGTCTCTGGTTCCGCCCCGCT
GCCCGCCCAAGTCCTCGAGTCATTCCGCAAACGCTACGGCCACACCATCCTGGAACGCTACGGCATGAGCGAAAACCTCA
TGAACATCAGCAATCCCTACCTCGGCGAACGCCGTCCCGGCAGCGTCGGACTGCCGCTCCCCGGCGTCTCCGTCCGGCTC
GTCGAAGGCGAGATCCAGCTCAAAGGCCCCAACCTCTTCAAGGGCTACTGGCGCCGCGAAGAGGCCACTCGCGCCGCCCT
CGTCGATGGCTGGTTCCGCACCGGCGATCTCGCCGAATGCTCGCTCGATGGCTACTACACGCTCTCCGGCCGCAAGAGCG
ACCTGATCATTTCCGGCGGCTTCAACATCTATCCGCGCGAGATCGAAGAGTTCCTCCAGGAACAGGAGGAGATCGCAGAG
GCCGCCGTCGTCGGCCTGCCCGACCCGGTCCGCGGCGAAGTGCCAGTGGCGTACGTGGTCTGCAAATGTGCGTTCGATGC
CGCCGATCTGGAGGCCCGATGCCGCGCCCAGTTCGCGTCGTTCAAAGTGCCCCGCGCCTTCCGGACTGTGCCCATGCTGC
CGCGTAACGCCATGGGCAAAATCCAGAAGCACCTGCTGGAGCGCTAG

Upstream 100 bases:

>100_bases
ACACCATCGGCACTCCGGTCGCACTGACTTGCATCGCCTTCCTGGTCGGACTGGCGCTGTTACCGCTCGCCGTGGAAACT
AAAGGCAAGGAGCTGCCCGC

Downstream 100 bases:

>100_bases
CCATGTCGCGCGATCTCACGCCATCGCCGCTCCTCGTGCAGGTCGCGGACCTTCTGCCGCCCGGCCGCGCGCTCGATCTC
GCCTGCGGCACTGGCCGCAA

Product: AMP-dependent synthetase and ligase

Products: NA

Alternate protein names: Long-chain acyl-CoA synthetase [H]

Number of amino acids: Translated: 468; Mature: 468

Protein sequence:

>468_residues
MNLTHLFDLSLSGRRDTGALEFQDRCYTFGELDSRSNRLANLLLHRGLKTGDRLCCYLANCVEMIDLYLACVKLGVIFVP
INILYRDREMHHILSDAEPIALIAAEPFPAPVPIWRAADLAAEAASFPDARPTIALDGDTPAGIIYTSGTTGASKGAVLT
HNNFAANAITLLTCWQITAADRFLLALPLFHVHALGNGLHCWLASGCRMRLLERFEHQKAAAEFLDFRPTLFFGVPTIYV
RLLDIPPDAAREIGAAMRLFVSGSAPLPAQVLESFRKRYGHTILERYGMSENLMNISNPYLGERRPGSVGLPLPGVSVRL
VEGEIQLKGPNLFKGYWRREEATRAALVDGWFRTGDLAECSLDGYYTLSGRKSDLIISGGFNIYPREIEEFLQEQEEIAE
AAVVGLPDPVRGEVPVAYVVCKCAFDAADLEARCRAQFASFKVPRAFRTVPMLPRNAMGKIQKHLLER

Sequences:

>Translated_468_residues
MNLTHLFDLSLSGRRDTGALEFQDRCYTFGELDSRSNRLANLLLHRGLKTGDRLCCYLANCVEMIDLYLACVKLGVIFVP
INILYRDREMHHILSDAEPIALIAAEPFPAPVPIWRAADLAAEAASFPDARPTIALDGDTPAGIIYTSGTTGASKGAVLT
HNNFAANAITLLTCWQITAADRFLLALPLFHVHALGNGLHCWLASGCRMRLLERFEHQKAAAEFLDFRPTLFFGVPTIYV
RLLDIPPDAAREIGAAMRLFVSGSAPLPAQVLESFRKRYGHTILERYGMSENLMNISNPYLGERRPGSVGLPLPGVSVRL
VEGEIQLKGPNLFKGYWRREEATRAALVDGWFRTGDLAECSLDGYYTLSGRKSDLIISGGFNIYPREIEEFLQEQEEIAE
AAVVGLPDPVRGEVPVAYVVCKCAFDAADLEARCRAQFASFKVPRAFRTVPMLPRNAMGKIQKHLLER
>Mature_468_residues
MNLTHLFDLSLSGRRDTGALEFQDRCYTFGELDSRSNRLANLLLHRGLKTGDRLCCYLANCVEMIDLYLACVKLGVIFVP
INILYRDREMHHILSDAEPIALIAAEPFPAPVPIWRAADLAAEAASFPDARPTIALDGDTPAGIIYTSGTTGASKGAVLT
HNNFAANAITLLTCWQITAADRFLLALPLFHVHALGNGLHCWLASGCRMRLLERFEHQKAAAEFLDFRPTLFFGVPTIYV
RLLDIPPDAAREIGAAMRLFVSGSAPLPAQVLESFRKRYGHTILERYGMSENLMNISNPYLGERRPGSVGLPLPGVSVRL
VEGEIQLKGPNLFKGYWRREEATRAALVDGWFRTGDLAECSLDGYYTLSGRKSDLIISGGFNIYPREIEEFLQEQEEIAE
AAVVGLPDPVRGEVPVAYVVCKCAFDAADLEARCRAQFASFKVPRAFRTVPMLPRNAMGKIQKHLLER

Specific function: Involved in the degradation of long-chain fatty acids [H]

COG id: COG0318

COG function: function code IQ; Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATP-dependent AMP-binding enzyme family [H]

Homologues:

Organism=Homo sapiens, GI187761345, Length=525, Percent_Identity=32.9523809523809, Blast_Score=219, Evalue=6e-57,
Organism=Homo sapiens, GI187761343, Length=525, Percent_Identity=32.9523809523809, Blast_Score=219, Evalue=6e-57,
Organism=Homo sapiens, GI156151445, Length=511, Percent_Identity=26.4187866927593, Blast_Score=161, Evalue=1e-39,
Organism=Homo sapiens, GI122937307, Length=486, Percent_Identity=27.3662551440329, Blast_Score=148, Evalue=9e-36,
Organism=Homo sapiens, GI42544132, Length=490, Percent_Identity=25.7142857142857, Blast_Score=146, Evalue=5e-35,
Organism=Homo sapiens, GI38505220, Length=488, Percent_Identity=27.2540983606557, Blast_Score=145, Evalue=8e-35,
Organism=Homo sapiens, GI157311624, Length=515, Percent_Identity=25.2427184466019, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI157311622, Length=515, Percent_Identity=25.2427184466019, Blast_Score=137, Evalue=3e-32,
Organism=Homo sapiens, GI115511026, Length=494, Percent_Identity=26.7206477732794, Blast_Score=134, Evalue=2e-31,
Organism=Homo sapiens, GI58082049, Length=515, Percent_Identity=25.2427184466019, Blast_Score=132, Evalue=8e-31,
Organism=Homo sapiens, GI42794760, Length=474, Percent_Identity=25.1054852320675, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42794758, Length=474, Percent_Identity=25.1054852320675, Blast_Score=114, Evalue=2e-25,
Organism=Homo sapiens, GI42794756, Length=474, Percent_Identity=25.1054852320675, Blast_Score=114, Evalue=3e-25,
Organism=Homo sapiens, GI57165410, Length=322, Percent_Identity=27.3291925465839, Blast_Score=96, Evalue=5e-20,
Organism=Homo sapiens, GI40807491, Length=323, Percent_Identity=26.625386996904, Blast_Score=94, Evalue=3e-19,
Organism=Homo sapiens, GI57165412, Length=322, Percent_Identity=26.3975155279503, Blast_Score=90, Evalue=6e-18,
Organism=Homo sapiens, GI8923896, Length=367, Percent_Identity=25.6130790190736, Blast_Score=89, Evalue=8e-18,
Organism=Homo sapiens, GI253970489, Length=367, Percent_Identity=25.6130790190736, Blast_Score=89, Evalue=1e-17,
Organism=Homo sapiens, GI13375727, Length=516, Percent_Identity=22.8682170542636, Blast_Score=87, Evalue=3e-17,
Organism=Homo sapiens, GI40807357, Length=531, Percent_Identity=24.2937853107345, Blast_Score=86, Evalue=6e-17,
Organism=Homo sapiens, GI28416953, Length=513, Percent_Identity=22.8070175438596, Blast_Score=81, Evalue=2e-15,
Organism=Escherichia coli, GI145693145, Length=487, Percent_Identity=29.7741273100616, Blast_Score=199, Evalue=3e-52,
Organism=Escherichia coli, GI1788107, Length=526, Percent_Identity=28.3269961977186, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI221142682, Length=490, Percent_Identity=27.9591836734694, Blast_Score=159, Evalue=5e-40,
Organism=Escherichia coli, GI1788595, Length=461, Percent_Identity=26.4642082429501, Blast_Score=124, Evalue=1e-29,
Organism=Escherichia coli, GI1786810, Length=502, Percent_Identity=25.8964143426295, Blast_Score=120, Evalue=3e-28,
Organism=Escherichia coli, GI1789201, Length=343, Percent_Identity=29.4460641399417, Blast_Score=116, Evalue=4e-27,
Organism=Escherichia coli, GI1790505, Length=518, Percent_Identity=22.972972972973, Blast_Score=93, Evalue=4e-20,
Organism=Escherichia coli, GI1786801, Length=462, Percent_Identity=24.8917748917749, Blast_Score=89, Evalue=7e-19,
Organism=Escherichia coli, GI1786529, Length=544, Percent_Identity=22.9779411764706, Blast_Score=80, Evalue=3e-16,
Organism=Caenorhabditis elegans, GI32563687, Length=456, Percent_Identity=36.1842105263158, Blast_Score=299, Evalue=2e-81,
Organism=Caenorhabditis elegans, GI17558820, Length=466, Percent_Identity=36.9098712446352, Blast_Score=288, Evalue=5e-78,
Organism=Caenorhabditis elegans, GI71994694, Length=521, Percent_Identity=25.5278310940499, Blast_Score=147, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI71994703, Length=521, Percent_Identity=25.5278310940499, Blast_Score=147, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI71994690, Length=521, Percent_Identity=25.5278310940499, Blast_Score=146, Evalue=2e-35,
Organism=Caenorhabditis elegans, GI17560308, Length=512, Percent_Identity=26.953125, Blast_Score=144, Evalue=1e-34,
Organism=Caenorhabditis elegans, GI17559526, Length=491, Percent_Identity=25.8655804480652, Blast_Score=137, Evalue=1e-32,
Organism=Caenorhabditis elegans, GI17557194, Length=494, Percent_Identity=24.2914979757085, Blast_Score=131, Evalue=9e-31,
Organism=Caenorhabditis elegans, GI17538037, Length=491, Percent_Identity=24.0325865580448, Blast_Score=123, Evalue=3e-28,
Organism=Caenorhabditis elegans, GI17531443, Length=501, Percent_Identity=23.3532934131737, Blast_Score=118, Evalue=6e-27,
Organism=Caenorhabditis elegans, GI71996755, Length=481, Percent_Identity=26.6112266112266, Blast_Score=114, Evalue=2e-25,
Organism=Caenorhabditis elegans, GI71985884, Length=359, Percent_Identity=26.7409470752089, Blast_Score=100, Evalue=3e-21,
Organism=Caenorhabditis elegans, GI17556552, Length=484, Percent_Identity=24.3801652892562, Blast_Score=99, Evalue=4e-21,
Organism=Caenorhabditis elegans, GI25141359, Length=469, Percent_Identity=21.9616204690832, Blast_Score=87, Evalue=2e-17,
Organism=Caenorhabditis elegans, GI17560140, Length=357, Percent_Identity=24.3697478991597, Blast_Score=86, Evalue=3e-17,
Organism=Caenorhabditis elegans, GI17510401, Length=166, Percent_Identity=30.1204819277108, Blast_Score=86, Evalue=5e-17,
Organism=Caenorhabditis elegans, GI71982997, Length=530, Percent_Identity=22.6415094339623, Blast_Score=80, Evalue=2e-15,
Organism=Caenorhabditis elegans, GI71983001, Length=530, Percent_Identity=22.6415094339623, Blast_Score=80, Evalue=2e-15,
Organism=Saccharomyces cerevisiae, GI6319699, Length=371, Percent_Identity=29.6495956873315, Blast_Score=151, Evalue=2e-37,
Organism=Saccharomyces cerevisiae, GI6323182, Length=537, Percent_Identity=23.2774674115456, Blast_Score=107, Evalue=3e-24,
Organism=Saccharomyces cerevisiae, GI6319264, Length=529, Percent_Identity=22.4952741020794, Blast_Score=99, Evalue=2e-21,
Organism=Drosophila melanogaster, GI24581924, Length=527, Percent_Identity=26.3757115749526, Blast_Score=153, Evalue=2e-37,
Organism=Drosophila melanogaster, GI21355181, Length=483, Percent_Identity=26.5010351966874, Blast_Score=143, Evalue=3e-34,
Organism=Drosophila melanogaster, GI18859661, Length=510, Percent_Identity=25.4901960784314, Blast_Score=138, Evalue=9e-33,
Organism=Drosophila melanogaster, GI221329755, Length=405, Percent_Identity=26.1728395061728, Blast_Score=107, Evalue=2e-23,
Organism=Drosophila melanogaster, GI62472339, Length=530, Percent_Identity=22.2641509433962, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI24667955, Length=530, Percent_Identity=22.2641509433962, Blast_Score=97, Evalue=2e-20,
Organism=Drosophila melanogaster, GI21356947, Length=474, Percent_Identity=22.7848101265823, Blast_Score=97, Evalue=3e-20,
Organism=Drosophila melanogaster, GI281366413, Length=460, Percent_Identity=23.695652173913, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24648260, Length=434, Percent_Identity=24.4239631336406, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24667959, Length=386, Percent_Identity=24.0932642487047, Blast_Score=91, Evalue=1e-18,
Organism=Drosophila melanogaster, GI24666501, Length=482, Percent_Identity=23.6514522821577, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24666497, Length=482, Percent_Identity=23.6514522821577, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI19922652, Length=438, Percent_Identity=24.2009132420091, Blast_Score=91, Evalue=2e-18,
Organism=Drosophila melanogaster, GI24648253, Length=476, Percent_Identity=22.4789915966387, Blast_Score=89, Evalue=8e-18,
Organism=Drosophila melanogaster, GI21358303, Length=470, Percent_Identity=22.3404255319149, Blast_Score=89, Evalue=9e-18,
Organism=Drosophila melanogaster, GI24648255, Length=476, Percent_Identity=22.4789915966387, Blast_Score=87, Evalue=2e-17,
Organism=Drosophila melanogaster, GI24648257, Length=244, Percent_Identity=27.0491803278689, Blast_Score=81, Evalue=1e-15,
Organism=Drosophila melanogaster, GI24653035, Length=490, Percent_Identity=22.2448979591837, Blast_Score=79, Evalue=8e-15,
Organism=Drosophila melanogaster, GI24656500, Length=487, Percent_Identity=22.9979466119097, Blast_Score=79, Evalue=9e-15,
Organism=Drosophila melanogaster, GI281365686, Length=210, Percent_Identity=25.7142857142857, Blast_Score=76, Evalue=4e-14,
Organism=Drosophila melanogaster, GI20130357, Length=356, Percent_Identity=24.7191011235955, Blast_Score=73, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020459
- InterPro:   IPR020845
- InterPro:   IPR000873 [H]

Pfam domain/function: PF00501 AMP-binding [H]

EC number: =6.2.1.3 [H]

Molecular weight: Translated: 51869; Mature: 51869

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS00455 AMP_BINDING

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
1.9 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLTHLFDLSLSGRRDTGALEFQDRCYTFGELDSRSNRLANLLLHRGLKTGDRLCCYLAN
CCCCEEEEEECCCCCCCCCEEEHHHHEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
CVEMIDLYLACVKLGVIFVPINILYRDREMHHILSDAEPIALIAAEPFPAPVPIWRAADL
HHHHHHHHHHHHHHHHHEEEEEHEEECHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHH
AAEAASFPDARPTIALDGDTPAGIIYTSGTTGASKGAVLTHNNFAANAITLLTCWQITAA
HHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHH
DRFLLALPLFHVHALGNGLHCWLASGCRMRLLERFEHQKAAAEFLDFRPTLFFGVPTIYV
HHHHHHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHEE
RLLDIPPDAAREIGAAMRLFVSGSAPLPAQVLESFRKRYGHTILERYGMSENLMNISNPY
EEECCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
LGERRPGSVGLPLPGVSVRLVEGEIQLKGPNLFKGYWRREEATRAALVDGWFRTGDLAEC
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SLDGYYTLSGRKSDLIISGGFNIYPREIEEFLQEQEEIAEAAVVGLPDPVRGEVPVAYVV
CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
CKCAFDAADLEARCRAQFASFKVPRAFRTVPMLPRNAMGKIQKHLLER
EHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MNLTHLFDLSLSGRRDTGALEFQDRCYTFGELDSRSNRLANLLLHRGLKTGDRLCCYLAN
CCCCEEEEEECCCCCCCCCEEEHHHHEECCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHH
CVEMIDLYLACVKLGVIFVPINILYRDREMHHILSDAEPIALIAAEPFPAPVPIWRAADL
HHHHHHHHHHHHHHHHHEEEEEHEEECHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHH
AAEAASFPDARPTIALDGDTPAGIIYTSGTTGASKGAVLTHNNFAANAITLLTCWQITAA
HHHHHCCCCCCCEEEECCCCCCEEEEECCCCCCCCCEEEECCCCCCCCEEEEEEHHHHHH
DRFLLALPLFHVHALGNGLHCWLASGCRMRLLERFEHQKAAAEFLDFRPTLFFGVPTIYV
HHHHHHHHHHHHHHHCCCEEEEHHCCHHHHHHHHHHHHHHHHHHHHCCCHHHHCCHHHEE
RLLDIPPDAAREIGAAMRLFVSGSAPLPAQVLESFRKRYGHTILERYGMSENLMNISNPY
EEECCCCHHHHHHHHHHEEEECCCCCCCHHHHHHHHHHHCHHHHHHCCCCCCCCCCCCCC
LGERRPGSVGLPLPGVSVRLVEGEIQLKGPNLFKGYWRREEATRAALVDGWFRTGDLAEC
CCCCCCCCCCCCCCCCEEEEEEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEE
SLDGYYTLSGRKSDLIISGGFNIYPREIEEFLQEQEEIAEAAVVGLPDPVRGEVPVAYVV
CCCCEEEECCCCCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEE
CKCAFDAADLEARCRAQFASFKVPRAFRTVPMLPRNAMGKIQKHLLER
EHHHCCCCCHHHHHHHHHHHCCCCHHHHCCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9579061; 9384377 [H]