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The map label for this gene is xerD [C]

Identifier: 116619764

GI number: 116619764

Start: 792476

End: 793714

Strand: Direct

Name: xerD [C]

Synonym: Acid_0630

Alternate gene names: 116619764

Gene position: 792476-793714 (Clockwise)

Preceding gene: 116619763

Following gene: 116619765

Centisome position: 7.95

GC content: 59.64

Gene sequence:

>1239_bases
GTGATAAACCAACTCTTCACCTTATCAAGCACGATTGAACGGCTGCGCCAGGGGCCTTTGAATGAATACCTCGATGCCTA
TGCGGCCGCTGTTGCCGAACAGGGCTATACGCACGACTCGATCAGACAGCAGATCGTAGTCATTGCCGATTTCAGCCGCT
GGCTGGCACAGAAACACATTGATGTCCAGGCACTGAACAGCCAGGTTGTGGATCGATATCTGCGGCTTCGCCGTCGGCAG
CAGCGGATCCGCAGAGGCGAGCCGAAAACGCTGGCGCGACTGCTGGCCATGCTTGGCCAAAGAGGCGTTGTGAAACAACA
CCAACAACCGGTCGCAGCCAACGCCCGGACGAGGATCACCAACGAGTTCGGATGCTACCTGTTGCAGGATCTCGGCCTGT
CCCCATCCACGCTGCTCAACTACGTGCCCGTCGCGGAGCAGTTCCTGGCCGAACGATTTCACAACGCGGTTCCGAACGTC
GCCATGTTACGGGCAACGCACGTCACCGGATTCGTTTTACGTCACGCACGTCAGTTAAGTCCTGTGCGGGCCGGGCTGAT
GGTAACGGCGCTTCGGTCGTTTTTTCGTTATCTGAGGCACCGGGGCGTAATCGCTACCGATCTTGCTGCTTGTGTCCCCA
CGGTCCCCAACTGGTCGCTTTCCACGCTTCCAAGGTTCTTACCGACTGCCGCGGTGGAAAGTATTCTCGAGTGCTGCGAT
CGAACGACGTCCGTTGGCAGGCGGAACCATACCATCTTGTTGCTGCTCGCCAGGCTCGGCGTACGCGCCGGCGAAGTCGT
CGGTCTGAGCTTGGACGATATTGACTGGAGCACGGGCCAGATCACCATTCGCGGAAAGGGCGGGAAATCGGCCCAACTAC
CGCTGGTCAACGACGTAGGCTCCGCTCTTGCCGACTATTTACGTCACGATCGCCCACGTTCGGCTACTCGCAGAGTGTTC
CTTCGCAACCGGGCGCCGTTAGTCGGCTTTGGGAACTCCTCGACGATTTCCTCTCTGGTCAGGCGCGCTCTGAAACATGC
CGGCGTAGAGTCGGCGCACACCGGCGCCCATGTGCTTCGACATTCGCTAGCCACGAGTTTACTTCGGCAGGGTGGCTCGC
TGGATGAGATTGGCGAACTGCTGCGGCACCAGAGCCCCAACACGACGGCGATCTACGCCAAAGTAGACGTCACCGCCTTG
CACACCCTGGCGTTGCCGTGGCCGGGAGGTGGCCGATGA

Upstream 100 bases:

>100_bases
CCCGGACTATGCCGCGTGTGGCGTGCGAGCCGCGATTCATGGGCATTTAAATAGCGGCAACGCGGCATAGGTTTGGGTTC
GTGCTTGGCACTCTGGGAGG

Downstream 100 bases:

>100_bases
ATCCGCTGGCCAAAGGTATCCGTGACTACCTGGCTTTGCGTCGTGGCCTGGGGTTCAAGCTGGCTCGGCATGAGGCTGGG
CTGAAGGAGTTCGCGTCTTT

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 412; Mature: 412

Protein sequence:

>412_residues
MINQLFTLSSTIERLRQGPLNEYLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQVVDRYLRLRRRQ
QRIRRGEPKTLARLLAMLGQRGVVKQHQQPVAANARTRITNEFGCYLLQDLGLSPSTLLNYVPVAEQFLAERFHNAVPNV
AMLRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRNRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR

Sequences:

>Translated_412_residues
MINQLFTLSSTIERLRQGPLNEYLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQVVDRYLRLRRRQ
QRIRRGEPKTLARLLAMLGQRGVVKQHQQPVAANARTRITNEFGCYLLQDLGLSPSTLLNYVPVAEQFLAERFHNAVPNV
AMLRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRNRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR
>Mature_412_residues
MINQLFTLSSTIERLRQGPLNEYLDAYAAAVAEQGYTHDSIRQQIVVIADFSRWLAQKHIDVQALNSQVVDRYLRLRRRQ
QRIRRGEPKTLARLLAMLGQRGVVKQHQQPVAANARTRITNEFGCYLLQDLGLSPSTLLNYVPVAEQFLAERFHNAVPNV
AMLRATHVTGFVLRHARQLSPVRAGLMVTALRSFFRYLRHRGVIATDLAACVPTVPNWSLSTLPRFLPTAAVESILECCD
RTTSVGRRNHTILLLLARLGVRAGEVVGLSLDDIDWSTGQITIRGKGGKSAQLPLVNDVGSALADYLRHDRPRSATRRVF
LRNRAPLVGFGNSSTISSLVRRALKHAGVESAHTGAHVLRHSLATSLLRQGGSLDEIGELLRHQSPNTTAIYAKVDVTAL
HTLALPWPGGGR

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=282, Percent_Identity=28.0141843971631, Blast_Score=90, Evalue=3e-19,
Organism=Escherichia coli, GI1789261, Length=227, Percent_Identity=30.3964757709251, Blast_Score=89, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 45582; Mature: 45582

Theoretical pI: Translated: 11.45; Mature: 11.45

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEECCCCCCCC
>Mature Secondary Structure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HHHHHHHHHCCCCHHHHHHHHHCCCCCCEEEEEEEEHHHHHHEECCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]