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The map label for this gene is xerD [C]

Identifier: 116619765

GI number: 116619765

Start: 794639

End: 795637

Strand: Direct

Name: xerD [C]

Synonym: Acid_0632

Alternate gene names: 116619765

Gene position: 794639-795637 (Clockwise)

Preceding gene: 116619764

Following gene: 116619767

Centisome position: 7.97

GC content: 61.56

Gene sequence:

>999_bases
ATGCGGGATCCCGCTAATCTTGCTGCCTTGCTGCAGTCTTTCTTCACCACGCGTTTGATGGCGCAGCGGAAAGCCAGCCC
TCACACCATCGCCTCGTATCGCGATACGTTCCGCCTGCTGTTGCAGTTTGCTCAAATGCGGCTACGCAAAGCCCCCTCTC
AGTTGGGACTGGAAGATCTGGATGCCTCTTTGGTCGGCGCGTTCCTGGAAGATCTGGGAAACCGCCGCCACAATGGCGCG
CGTAGCCGGAACCTTCGCTTGACGGCCATCCGGTCGTTCTTCCGCTACGCTTCGCTGGAGGCGCCGGCGCACAGCGGAAT
CATTCAACGAGTGCTGGCGATTCCGAACCAACGCCAACGGCGCACCCTGGTTGGTTTTTTGACCCGACCGGAGATCGACG
CGCTGCTGGCGGCGCCGAATCGCACGCAGTGGCTGGGACGCCGTGACCATGCCTTTCTGCTCACCGCCGTTCAGACCGGC
TTACGATTATCTGAAATGACCGGGTTGCGCCACGAGGATGTCTCGCTCGGAGCCGGCGCACATGTGCGTTGCCGGGGAAA
GGGACGCAAGGAACGCTGTACGCCTTTGGCCAAGCCCACGGCCGCGGTCCTGAAAGCTTGGATTCGGGAGCAAGGCAGAG
GAGATTCCAAGACGCTGTTTCCCAGTACCCGCGGCGGACCCTTGAGTGCCGATGGGGTTCAGCATTTGCTCGCACGCCAC
GTGGCGAAGGCGCGGAAACACTGCGCCTCGCTGCGCAAGAAACGGGTTTCGCCACACGTGCTTCGACACGCCGCCGCCAT
GGAACTCCTCCAGGCCGGCGTGGACCGAGCCGTAATCGCCCTTTGGCTCGGCCATGAGTCCGTCGAAACCACCCAGATCT
ACCTCGACGCCGACCTTGCGTTGAAAGAAGAGGCCTTGGCCAAGACCAACCCAGTCAAAGGCGGTCCCAAACGCTTTCAA
CCGGACGACGAGCTGCTGGCCTTCCTCAAACAACTCTAA

Upstream 100 bases:

>100_bases
GGGCATGCCCACGTAACCGATACCTATTGGTATCTGACCGGCACTCCCGAACTGTTGGGAGCGGCCAATAAGCGGCTGGA
GAAACGGTGGGAGGCCTTGA

Downstream 100 bases:

>100_bases
TCCCAAGCGTCCGGACTATGCCGCGTGACGATGATAGTGTCCAACCAAACCTCATATTCCGAGGGCCTCGAACCACTTCG
TTCTGATCTTCGCGGCATAA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 332; Mature: 332

Protein sequence:

>332_residues
MRDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGNRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRHEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGGPKRFQ
PDDELLAFLKQL

Sequences:

>Translated_332_residues
MRDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGNRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRHEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGGPKRFQ
PDDELLAFLKQL
>Mature_332_residues
MRDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDLDASLVGAFLEDLGNRRHNGA
RSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQRRTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTG
LRLSEMTGLRHEDVSLGAGAHVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
VAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLALKEEALAKTNPVKGGPKRFQ
PDDELLAFLKQL

Specific function: Site-Specific Tyrosine Recombinase, Which Acts By Catalyzing The Cutting And Rejoining Of The Recombining DNA Molecules. Binds Cooperatively To Specific DNA Consensus Sequences That Are Separated From Xerc Binding Sites By A Short Central Region, Forming

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=293, Percent_Identity=34.1296928327645, Blast_Score=105, Evalue=3e-24,
Organism=Escherichia coli, GI1790244, Length=292, Percent_Identity=29.7945205479452, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1790767, Length=177, Percent_Identity=29.9435028248588, Blast_Score=66, Evalue=2e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36931; Mature: 36931

Theoretical pI: Translated: 11.60; Mature: 11.60

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.5 %Met     (Translated Protein)
2.4 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
2.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHH
DASLVGAFLEDLGNRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQR
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
RTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGA
HHHHHHHCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
HVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
EEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEEEECCHH
LKEEALAKTNPVKGGPKRFQPDDELLAFLKQL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC
>Mature Secondary Structure
MRDPANLAALLQSFFTTRLMAQRKASPHTIASYRDTFRLLLQFAQMRLRKAPSQLGLEDL
CCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHCCHHHH
DASLVGAFLEDLGNRRHNGARSRNLRLTAIRSFFRYASLEAPAHSGIIQRVLAIPNQRQR
HHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCHHH
RTLVGFLTRPEIDALLAAPNRTQWLGRRDHAFLLTAVQTGLRLSEMTGLRHEDVSLGAGA
HHHHHHHCCCCHHHHHCCCCCHHHCCCCCCHHHHHHHHHCCHHHHHCCCCCCCCCCCCCC
HVRCRGKGRKERCTPLAKPTAAVLKAWIREQGRGDSKTLFPSTRGGPLSADGVQHLLARH
EEEECCCCCHHHCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHH
VAKARKHCASLRKKRVSPHVLRHAAAMELLQAGVDRAVIALWLGHESVETTQIYLDADLA
HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCHHHHHHHHHHCCCCCEEEEEEEECCHH
LKEEALAKTNPVKGGPKRFQPDDELLAFLKQL
HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9163424 [H]