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The map label for this gene is omp16 [H]

Identifier: 116619652

GI number: 116619652

Start: 625955

End: 626746

Strand: Direct

Name: omp16 [H]

Synonym: Acid_0513

Alternate gene names: 116619652

Gene position: 625955-626746 (Clockwise)

Preceding gene: 116619651

Following gene: 116619653

Centisome position: 6.28

GC content: 66.29

Gene sequence:

>792_bases
ATGTTCAGTAAACGGAAGTTGTCTACCATCGGCCTGGCGCTCGCGCTGGCGATGTTTGCGGTTGGATGCAAGAAGAAGGT
GCCCAAACCTCCTCCTCCTCCGCCCCCCGCGGCGCCCGCACCCGCGGCCGAACCGCCGAGGCCCGCCGCTCCGGCCGTGG
CCCAGTTCACGGCTGAACCTACCACCATTCAGCGCGGCCAGTCCTCGACTCTCCGTTGGGAAGTCAGCGGTAACGTCACC
AGTGTCTCCATCGACCAGGGCATCGGCACCGTCACCGGTACCGGCAATCGCCGCGTCAGCCCCAGCGATTCCACCACCTG
GGTCCTGACCGCCACCGGTCCGGGAGGAACCACCACTGCCTCGGCCACGGTCAATGTCTCCGCGCCGCCACCACCGCCGC
CGCCGGCGCCACCTACCGCCCAGGCGACCATCAACGATCGCATCGCCAGCGACGTGCAGGATGCCTTCTTCGATTACGAT
AAGACCGACATCCGCAGCGATGCCCGCGACGCACTGACCCGCAATGCCACCGCGCTCAAGGCCATCCTCAACGATTTCCC
CGGCGCCGCCATCGTCATCGAAGGCCATTGCGACGAACGCGGCTCAGCCGAGTACAACCTCGGCCTCGGCGATCGCCGCG
CCAGCTCGGCGAAGGAATTCCTGGTCGGCCTCGGCATCCCCGCCGACCGGCTGAAGACCATCAGCTACGGTAAGGAACGC
CCCCAATGCACCGAACAGAACGAGACTTGCTGGCAGAAAAACCGGCGCGTCCACTTCGCGCCGGGGCAGTAA

Upstream 100 bases:

>100_bases
CCATGCTGGCCAATGGAACCCAGATACAGCAACTAACTACCGCGGGCCAGAATGAGAGGCCGGTATGGGGCAGGTAACGC
AAGTTTAGGAGGCGATGTTC

Downstream 100 bases:

>100_bases
TCGCGTTTCGAGCCGTGACCGTGAGGGAGCGATCCATTCAGTTTGCATCCCTCACAGTACGATAGAAGGGTAGGCTGGCC
TGACCGCCGGCCTGCCCATG

Product: OmpA/MotB domain-containing protein

Products: NA

Alternate protein names: 16.5 kDa minor OMP; 16 kDa OMP; Minor outer membrane protein omp16 [H]

Number of amino acids: Translated: 263; Mature: 263

Protein sequence:

>263_residues
MFSKRKLSTIGLALALAMFAVGCKKKVPKPPPPPPPAAPAPAAEPPRPAAPAVAQFTAEPTTIQRGQSSTLRWEVSGNVT
SVSIDQGIGTVTGTGNRRVSPSDSTTWVLTATGPGGTTTASATVNVSAPPPPPPPAPPTAQATINDRIASDVQDAFFDYD
KTDIRSDARDALTRNATALKAILNDFPGAAIVIEGHCDERGSAEYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKER
PQCTEQNETCWQKNRRVHFAPGQ

Sequences:

>Translated_263_residues
MFSKRKLSTIGLALALAMFAVGCKKKVPKPPPPPPPAAPAPAAEPPRPAAPAVAQFTAEPTTIQRGQSSTLRWEVSGNVT
SVSIDQGIGTVTGTGNRRVSPSDSTTWVLTATGPGGTTTASATVNVSAPPPPPPPAPPTAQATINDRIASDVQDAFFDYD
KTDIRSDARDALTRNATALKAILNDFPGAAIVIEGHCDERGSAEYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKER
PQCTEQNETCWQKNRRVHFAPGQ
>Mature_263_residues
MFSKRKLSTIGLALALAMFAVGCKKKVPKPPPPPPPAAPAPAAEPPRPAAPAVAQFTAEPTTIQRGQSSTLRWEVSGNVT
SVSIDQGIGTVTGTGNRRVSPSDSTTWVLTATGPGGTTTASATVNVSAPPPPPPPAPPTAQATINDRIASDVQDAFFDYD
KTDIRSDARDALTRNATALKAILNDFPGAAIVIEGHCDERGSAEYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKER
PQCTEQNETCWQKNRRVHFAPGQ

Specific function: Thought To Play A Role In Bacterial Envelope Integrity. Very Strongly Associated With The Peptidoglycan. [C]

COG id: COG2885

COG function: function code M; Outer membrane protein and related peptidoglycan-associated (lipo)proteins

Gene ontology:

Cell location: Cell outer membrane; Lipid-anchor [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 OmpA-like domain [H]

Homologues:

Organism=Escherichia coli, GI1786962, Length=101, Percent_Identity=44.5544554455446, Blast_Score=99, Evalue=3e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR006664
- InterPro:   IPR006690
- InterPro:   IPR006665
- InterPro:   IPR014169 [H]

Pfam domain/function: PF00691 OmpA [H]

EC number: NA

Molecular weight: Translated: 27663; Mature: 27663

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: PS00013 PROKAR_LIPOPROTEIN ; PS51123 OMPA_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.5 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
2.3 %Cys+Met (Translated Protein)
1.5 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFSKRKLSTIGLALALAMFAVGCKKKVPKPPPPPPPAAPAPAAEPPRPAAPAVAQFTAEP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
TTIQRGQSSTLRWEVSGNVTSVSIDQGIGTVTGTGNRRVSPSDSTTWVLTATGPGGTTTA
CHHCCCCCCEEEEEECCCEEEEEECCCCCEEECCCCCEECCCCCCEEEEEEECCCCCEEE
SATVNVSAPPPPPPPAPPTAQATINDRIASDVQDAFFDYDKTDIRSDARDALTRNATALK
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AILNDFPGAAIVIEGHCDERGSAEYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKER
HHHHHCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHEECCCCHHHHHHHHCCCCC
PQCTEQNETCWQKNRRVHFAPGQ
CCCCCCCHHHHHHCCEEEECCCC
>Mature Secondary Structure
MFSKRKLSTIGLALALAMFAVGCKKKVPKPPPPPPPAAPAPAAEPPRPAAPAVAQFTAEP
CCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCC
TTIQRGQSSTLRWEVSGNVTSVSIDQGIGTVTGTGNRRVSPSDSTTWVLTATGPGGTTTA
CHHCCCCCCEEEEEECCCEEEEEECCCCCEEECCCCCEECCCCCCEEEEEEECCCCCEEE
SATVNVSAPPPPPPPAPPTAQATINDRIASDVQDAFFDYDKTDIRSDARDALTRNATALK
EEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
AILNDFPGAAIVIEGHCDERGSAEYNLGLGDRRASSAKEFLVGLGIPADRLKTISYGKER
HHHHHCCCEEEEEECCCCCCCCCEEECCCCCCHHHHHHHHHEECCCCHHHHHHHHCCCCC
PQCTEQNETCWQKNRRVHFAPGQ
CCCCCCCHHHHHHCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8063379; 10456959 [H]