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The map label for this gene is xpsF [H]

Identifier: 116619189

GI number: 116619189

Start: 70211

End: 71419

Strand: Direct

Name: xpsF [H]

Synonym: Acid_0044

Alternate gene names: 116619189

Gene position: 70211-71419 (Clockwise)

Preceding gene: 116619188

Following gene: 116619190

Centisome position: 0.7

GC content: 58.4

Gene sequence:

>1209_bases
ATGGCCGATTTCGTCCTCAAATACGCCGACGGGCGCGGACAGATTCATCAGCAGGTGGCCACGGCGGCCTCGGAGAAGGA
GTTGCGCGACAAATACGCGCAGCAGGGCTTCCTGATTTATTCGATTAAGCCGCGCTCCGGGGGAGTAGCGGGCTCGGGCT
TCCTGGGCGGCAAGAAGAAGCTCAATCTTGAGAAGTTCCTTATTTTCAATCAGCAATTCGTGACGCTGATCCGCGCCGGG
CTGCCGATTTTGAAGGCGCTCGACCTGTTGGCGGAGCGGTTGACCGATCCGAAACTGGGGCCCTACGTCAAATCGGTCCG
TGATGAGGTGCGAAACGGTTCGCTGCTCAGCGACGCCTTCCGGCTGCAGGGAATCTTCCCCAAGATGTACGTGACTTCGG
TGATGGCGGGCGAGAAGAGCGGCAGCCTGACCGAGGTTCTGGACCGCTACGTCACTTATCAGAAGATGTCACTGGCGGTG
AAGAAAAAGGTCATGGTGTCACTGATGTATCCGGCGGTGCTGATCGTGCTGGTGGCGCTGTTGATGGTGTTTCTGGTGAC
CTATGTGGTGCCGACCTTCGCCAATCTCTACAACAGCATGCAGGCGAAACTGCCGATGATGACGGTGTACCTGATTGCCA
TCGGAACCGCGTCGCAGAAGTATATCGTCTTCATGGTAGCGGGATTGGTCGGAACGATCTTCCTGTTCCGCTGGTGGGGG
CGCAAGGACTCAGCGCGGGAGAAGATCGATCGCGTGAAATTGAGAACGCCGCTGCTGGGCGAGATCTGGCTGAAGTATCA
GGTGGCGCAATTGGCGCGCATTCTGAGCACCCTGCTGGTGGGCGGCATTCCGCTCGTGCAGGCTATGGAAACGGCCGCGG
ATTCGCTGAACACTCCGCTGCTGAAGCGGGCGGTGGATGCGGCCGGAAAGAACGTCAGGGAGGGGCAGCCGCTTTCGGGT
TCGCTCAGCCAGTCGAAACTGTTTCCCCCGTTGGCCATCGACATGATCGAGGTCGGCGAATCCACCGGAGCGCTGCCTTC
GATGTTGAATAGCGTGGCGGAGTTTTTTGAAGAGGACGTGAATACCAAGATGGCGGCGACGCTATCGCTGATCGAGCCGG
CGATCATGATCGTCATGGGTGGAGTGGTGGCGTTCGTATTGATTGCGCTGTATCTGCCGATCTTCTCACTGGCGGACACC
ATTCGGTAA

Upstream 100 bases:

>100_bases
TCCGGCTCGAGCAGGAAAAGGCGGACCTGCCTGTGGACGCGAAGCTATTTCAATTCCAGGTACCGAAGGGCGCCCAACTG
GTGGAGACGGGACAGTAGCG

Downstream 100 bases:

>100_bases
GGGTTGAATTATGGCGACGATGGACAAGGCGAAATTATCGGAACCCGGGGCGGAGCAGTCCCAGGCGCAGGCCATCGCCG
CGCGGTATCGCTGCGAATAT

Product: type II secretion system protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 402; Mature: 401

Protein sequence:

>402_residues
MADFVLKYADGRGQIHQQVATAASEKELRDKYAQQGFLIYSIKPRSGGVAGSGFLGGKKKLNLEKFLIFNQQFVTLIRAG
LPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAFRLQGIFPKMYVTSVMAGEKSGSLTEVLDRYVTYQKMSLAV
KKKVMVSLMYPAVLIVLVALLMVFLVTYVVPTFANLYNSMQAKLPMMTVYLIAIGTASQKYIVFMVAGLVGTIFLFRWWG
RKDSAREKIDRVKLRTPLLGEIWLKYQVAQLARILSTLLVGGIPLVQAMETAADSLNTPLLKRAVDAAGKNVREGQPLSG
SLSQSKLFPPLAIDMIEVGESTGALPSMLNSVAEFFEEDVNTKMAATLSLIEPAIMIVMGGVVAFVLIALYLPIFSLADT
IR

Sequences:

>Translated_402_residues
MADFVLKYADGRGQIHQQVATAASEKELRDKYAQQGFLIYSIKPRSGGVAGSGFLGGKKKLNLEKFLIFNQQFVTLIRAG
LPILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAFRLQGIFPKMYVTSVMAGEKSGSLTEVLDRYVTYQKMSLAV
KKKVMVSLMYPAVLIVLVALLMVFLVTYVVPTFANLYNSMQAKLPMMTVYLIAIGTASQKYIVFMVAGLVGTIFLFRWWG
RKDSAREKIDRVKLRTPLLGEIWLKYQVAQLARILSTLLVGGIPLVQAMETAADSLNTPLLKRAVDAAGKNVREGQPLSG
SLSQSKLFPPLAIDMIEVGESTGALPSMLNSVAEFFEEDVNTKMAATLSLIEPAIMIVMGGVVAFVLIALYLPIFSLADT
IR
>Mature_401_residues
ADFVLKYADGRGQIHQQVATAASEKELRDKYAQQGFLIYSIKPRSGGVAGSGFLGGKKKLNLEKFLIFNQQFVTLIRAGL
PILKALDLLAERLTDPKLGPYVKSVRDEVRNGSLLSDAFRLQGIFPKMYVTSVMAGEKSGSLTEVLDRYVTYQKMSLAVK
KKVMVSLMYPAVLIVLVALLMVFLVTYVVPTFANLYNSMQAKLPMMTVYLIAIGTASQKYIVFMVAGLVGTIFLFRWWGR
KDSAREKIDRVKLRTPLLGEIWLKYQVAQLARILSTLLVGGIPLVQAMETAADSLNTPLLKRAVDAAGKNVREGQPLSGS
LSQSKLFPPLAIDMIEVGESTGALPSMLNSVAEFFEEDVNTKMAATLSLIEPAIMIVMGGVVAFVLIALYLPIFSLADTI
R

Specific function: Involved in a general secretion pathway (GSP) for the export of proteins [H]

COG id: COG1459

COG function: function code NU; Type II secretory pathway, component PulF

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Probable) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP F family [H]

Homologues:

Organism=Escherichia coli, GI1789724, Length=396, Percent_Identity=29.2929292929293, Blast_Score=187, Evalue=1e-48,
Organism=Escherichia coli, GI1786295, Length=336, Percent_Identity=25.297619047619, Blast_Score=132, Evalue=3e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003004
- InterPro:   IPR018076
- InterPro:   IPR001992 [H]

Pfam domain/function: PF00482 GSPII_F [H]

EC number: NA

Molecular weight: Translated: 44160; Mature: 44029

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: PS00874 T2SP_F

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.2 %Met     (Translated Protein)
4.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
ADFVLKYADGRGQIHQQVATAASEKELRDKYAQQGFLIYSIKPRSGGVAGSGFLGGKKK
CCCEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEECCCCCCCCCCCCCCCCCC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CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 1944223; 12024217 [H]