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The map label for this gene is potC [H]

Identifier: 116517092

GI number: 116517092

Start: 1251385

End: 1252158

Strand: Reverse

Name: potC [H]

Synonym: SPD_1219

Alternate gene names: 116517092

Gene position: 1252158-1251385 (Counterclockwise)

Preceding gene: 116515539

Following gene: 116516276

Centisome position: 61.2

GC content: 42.38

Gene sequence:

>774_bases
ATGAAAAAATTTGCCAACCTTTATCTGGGACTGGTCTTTCTGGTCCTCTACCTGCCTATCTTTTACTTGATTGGCTATGC
CTTTAATGCTGGTGATGATATGAATAGCTTTACAGGTTTTAGCTGGACTCACTTTGAAACCATGTTTGGAGATGGGAGAC
TCATGCTGATTTTGGCTCAGACATTTTTCTTGGCCTTCCTATCAGCCTTGATAGCGACCATTATCGGGACTTTTGGTGCC
ATTTACATCTACCAGTCTCGTAAGAAATACCAAGAAGCCTTTCTATCACTCAATAATATCCTCATGGTTGCGCCTGACGT
TATGATTGGTGCTAGCTTCTTGATTCTCTTTACCCAACTCAAGTTTTCACTTGGCTTTTTGACCGTTCTATCTAGTCATG
TGGCCTTCTCCATTCCTATCGTGGTCTTGATGGTCTTGCCTCGACTCAAGGAAATGAATGGCGACATGATTCATGCGGCC
TATGACTTGGGAGCTAGTCAATTTCAGATGTTTAAGGAAATCATGCTTCCTTACCTGACTCCGTCTATCATTGCTGGTTA
TTTCATGGCCTTCACCTATTCGTTAGATGACTTTGCCGTGACCTTCTTTGTAACAGGAAATGGCTTTTCAACCCTATCAG
TCGAGATTTACTCTCGTGCTCGCAAGGGGATTTCGCTAGAAATCAATGCCCTTTCTGCTCTAGTCTTTCTCTTTAGTATT
ATCCTAGTTGTAGGTTATTACTTTATCTCTCGTGAGAAGGAGGAGCAAGCATGA

Upstream 100 bases:

>100_bases
TTCTAACCAATGACAACTATGGTATGGGTTCAACTATCGGTGTGATTCTCATCCTGACCATGTTCATCACCATGTGGGTG
ACTAAGGAAAGGAGAGAACG

Downstream 100 bases:

>100_bases
AAAAAATCTATTCATTTTTAGCAGGAATTGCAGCGATTATCCTTGTCTTGTGGGGAATTGCGACTCATTTAGATAGTAAA
ATCAATAGTCGAGATAGTCA

Product: spermidine/putrescine ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 257; Mature: 257

Protein sequence:

>257_residues
MKKFANLYLGLVFLVLYLPIFYLIGYAFNAGDDMNSFTGFSWTHFETMFGDGRLMLILAQTFFLAFLSALIATIIGTFGA
IYIYQSRKKYQEAFLSLNNILMVAPDVMIGASFLILFTQLKFSLGFLTVLSSHVAFSIPIVVLMVLPRLKEMNGDMIHAA
YDLGASQFQMFKEIMLPYLTPSIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARKGISLEINALSALVFLFSI
ILVVGYYFISREKEEQA

Sequences:

>Translated_257_residues
MKKFANLYLGLVFLVLYLPIFYLIGYAFNAGDDMNSFTGFSWTHFETMFGDGRLMLILAQTFFLAFLSALIATIIGTFGA
IYIYQSRKKYQEAFLSLNNILMVAPDVMIGASFLILFTQLKFSLGFLTVLSSHVAFSIPIVVLMVLPRLKEMNGDMIHAA
YDLGASQFQMFKEIMLPYLTPSIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARKGISLEINALSALVFLFSI
ILVVGYYFISREKEEQA
>Mature_257_residues
MKKFANLYLGLVFLVLYLPIFYLIGYAFNAGDDMNSFTGFSWTHFETMFGDGRLMLILAQTFFLAFLSALIATIIGTFGA
IYIYQSRKKYQEAFLSLNNILMVAPDVMIGASFLILFTQLKFSLGFLTVLSSHVAFSIPIVVLMVLPRLKEMNGDMIHAA
YDLGASQFQMFKEIMLPYLTPSIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARKGISLEINALSALVFLFSI
ILVVGYYFISREKEEQA

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=229, Percent_Identity=33.6244541484716, Blast_Score=150, Evalue=6e-38,
Organism=Escherichia coli, GI1787081, Length=258, Percent_Identity=32.1705426356589, Blast_Score=119, Evalue=2e-28,
Organism=Escherichia coli, GI1787714, Length=251, Percent_Identity=26.2948207171315, Blast_Score=85, Evalue=5e-18,
Organism=Escherichia coli, GI1788764, Length=179, Percent_Identity=25.1396648044693, Blast_Score=67, Evalue=8e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 28949; Mature: 28949

Theoretical pI: Translated: 6.26; Mature: 6.26

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKFANLYLGLVFLVLYLPIFYLIGYAFNAGDDMNSFTGFSWTHFETMFGDGRLMLILAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
TFFLAFLSALIATIIGTFGAIYIYQSRKKYQEAFLSLNNILMVAPDVMIGASFLILFTQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHH
KFSLGFLTVLSSHVAFSIPIVVLMVLPRLKEMNGDMIHAAYDLGASQFQMFKEIMLPYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCC
PSIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARKGISLEINALSALVFLFSI
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHCCCEEEHHHHHHHHHHHHH
ILVVGYYFISREKEEQA
HHHHHHHHHHCCHHCCC
>Mature Secondary Structure
MKKFANLYLGLVFLVLYLPIFYLIGYAFNAGDDMNSFTGFSWTHFETMFGDGRLMLILAQ
CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHCCCHHHHHHHH
TFFLAFLSALIATIIGTFGAIYIYQSRKKYQEAFLSLNNILMVAPDVMIGASFLILFTQL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEECCHHHHHHHHHHHHHHH
KFSLGFLTVLSSHVAFSIPIVVLMVLPRLKEMNGDMIHAAYDLGASQFQMFKEIMLPYLT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEHHHHCCHHHHHHHHHHHHHHCC
PSIIAGYFMAFTYSLDDFAVTFFVTGNGFSTLSVEIYSRARKGISLEINALSALVFLFSI
HHHHHHHHHHHHHCCCCEEEEEEEECCCCCEEHHHHHHHHHCCCEEEHHHHHHHHHHHHH
ILVVGYYFISREKEEQA
HHHHHHHHHHCCHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]