| Definition | Streptococcus pneumoniae D39, complete genome. |
|---|---|
| Accession | NC_008533 |
| Length | 2,046,115 |
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The map label for this gene is nrdD [H]
Identifier: 116516887
GI number: 116516887
Start: 191178
End: 193385
Strand: Direct
Name: nrdD [H]
Synonym: SPD_0187
Alternate gene names: 116516887
Gene position: 191178-193385 (Clockwise)
Preceding gene: 116515592
Following gene: 116515859
Centisome position: 9.34
GC content: 43.07
Gene sequence:
>2208_bases ATGATTGCACTAGAAGAAAAAATTACAATTTTGCCAACTCTCTTCGTCGAGAAACGAGATGGGAGACGTGTTGTATTTGA TGTGGACAAGATTGACAAGGCTCTCCACACGGCGGCTGACAAGGTTATGGATGTGACACCCCTGGTTGAAAAACGCCTCA ATGATCTGACTGAGCGAATTATTACAGAAATTCATAGTCGCTTTCCACAGGGAATTAAGATTTACGAAATTCAAAATATC GTAGAACATGAACTCCTTGAAGCCAAAGAATATGCGCTGGCTGAGGAGTATATTACTTATCGGACACAGAGGGATTTTGA GCGCTCAAAAGCGACGGATATCAACTTTAGTATTCATAAACTTCTCAACAAAGACCAGACAGTTGTCAATGAAAACGCTA ATAAAGACAGTGATGTCTTTAACACTCAGCGTGATTTGACAGCAGGGATTGTTGGGAAATCAATCGGACTGCAAATGCTT CCTAAGCACGTAGCCAATGCCCACCAAAAGGGGGATATCCACTATCACGATTTGGACTACAGTCCCTATACCCCTATGAC CAACTGCTGTTTGATTGATTTTAAGGGTATGTTGGAAAATGGTTTTAAGATTGGAAATGCAGAGGTAGAGAGTCCCAAGT CTATCCAGACTGCGACAGCACAGATTTCTCAAATCATTGCCAACGTTGCTTCTAGCCAGTACGGTGGCTGTTCAGCTGAC CGTATCGATGAAATTTTGGCGCCTTATGCAGAGAAGAATTATCAAAAACATCTCAAAGATGCAGAAGAGTGGGTATTGCC TGAAAAACAGGAAGATTACGCTTGGAAGAAAGCGCAAAAGGACATCTACGATGCCATGCAATCTCTTGAGTATGAAATCA ATACTCTCTTCACTTCAAATGGACAAACACCTTTTACTTCGTTAGGTTTTGGTCTGGGAACCAGTCGTTTTGAACGAGAA ATTCAAAAAGCTATTTTAAACATTCGCATCAAGGGTCTTGGTTCAGAACACCGTACGGCTATCTTTCCTAAACTTATCTT TACGCTTAAAAGAGGCCTCAACTTAGAGGAAGGAACTCCCAACTATGACATCAAGCAGTTGGCTCTAGAGTGTGCAACCA AGCGGATGTATCCAGACGTCTTGTCTTATGATAAGATTGTTGATTTGACAGGTTCTTTCAAGGTGCCTATGGGCTGCCGT TCTTTCCTTCAAGGGTGGAAGGATGAAAATGGTGTAGAAGTCAATTCAGGTCGCATGAATCTGGGTGTTGTGACGGTTAA TCTGCCTCGTATTGCTCTTGAGTCTGAAGGTGATATGAATAAGTTCTGGGAAATCTTCAACGAGCGAATGAATATCGCAG AAGATGCTCTTGTTTACCGTGTCGAACGCACTAAAGAGGCGACACCAGCGAATGCTCCTATCCTTTATCAGTACGGTGCT TTTGGCCATCGTCTAGGTAAAGAAGAAAGTGTTGACCAGCTCTTTAAGAATCGTCGGGCGACCGTTTCGCTGGGCTATAT CGGCTTGTATGAAGTAGCGACAGTTTTCTTTGGTAACAGCTGGGAAAGTAATCCAGATGCTAAGGAATTCACGCTAGACA TCATTCACGATATGAAACGCCGTGTAGAAGAGTGGTCAGACCAATATGGCTACCATTTCTCTATCTACTCAACACCATCC GAAAGTCTGACAGACCGTTTCTGCCGACTAGATATAGACAAGTTTGGCTCTATTCCTGATATCACAGACAAGGAATACTA CACCAACTCTTTCCACTACGATGTTCGTAAAAATCCAACACCGTTTGAAAAATTGGACTTTGAGAAAGTCTATCCAGAAG CAGGTGCGTCAGGTGGTTTCATCCATTATTGTGAGTATCCAGTCCTTCAGCAAAATCCAAAGGCCTTGGAAGCTGTCTGG GATTATGCTTATGACCGTGTAGGCTATCTAGGCACCAATACTCCGATTGACCGTTGCTACAAGTGTGACTTTGAAGGGGA TTTTGAACCAACTGAGAGAGGGTTTGCTTGTCCAAACTGTGGCAATAGCGATCCTAAAACAGTAGACGTTGTTAAACGGA CTTGTGGCTATCTTGGCAATCCTCAAGCGAGACCAATGGTTAACGGGCGTCACAAGGAAATCGCTGCGCGTGTCAAACAT ATGAATGGTTCAACGATTAAAATAGCTGGGCATCAAGTAACAAATTAG
Upstream 100 bases:
>100_bases ATTTTTAAAAATTTTAGGATTTTTAACACAAGATATTGATTTTTCTTTTTAGAGTGGTATAATACTTTTTAGAAAGAACA TTTTAGAAAAGAGCATGCGT
Downstream 100 bases:
>100_bases AAAGAAATGAAATGGGAAAATATCAACTAGACGATAAGGGGCGCGCACAAGTGACCCGTTATCACGAGAAACACTCTAAA GGTGGAGCTGGTAAGAAAGA
Product: anaerobic ribonucleoside triphosphate reductase
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 735; Mature: 735
Protein sequence:
>735_residues MIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIITEIHSRFPQGIKIYEIQNI VEHELLEAKEYALAEEYITYRTQRDFERSKATDINFSIHKLLNKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLQML PKHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLENGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCSAD RIDEILAPYAEKNYQKHLKDAEEWVLPEKQEDYAWKKAQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSRFERE IQKAILNIRIKGLGSEHRTAIFPKLIFTLKRGLNLEEGTPNYDIKQLALECATKRMYPDVLSYDKIVDLTGSFKVPMGCR SFLQGWKDENGVEVNSGRMNLGVVTVNLPRIALESEGDMNKFWEIFNERMNIAEDALVYRVERTKEATPANAPILYQYGA FGHRLGKEESVDQLFKNRRATVSLGYIGLYEVATVFFGNSWESNPDAKEFTLDIIHDMKRRVEEWSDQYGYHFSIYSTPS ESLTDRFCRLDIDKFGSIPDITDKEYYTNSFHYDVRKNPTPFEKLDFEKVYPEAGASGGFIHYCEYPVLQQNPKALEAVW DYAYDRVGYLGTNTPIDRCYKCDFEGDFEPTERGFACPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEIAARVKH MNGSTIKIAGHQVTN
Sequences:
>Translated_735_residues MIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIITEIHSRFPQGIKIYEIQNI VEHELLEAKEYALAEEYITYRTQRDFERSKATDINFSIHKLLNKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLQML PKHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLENGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCSAD RIDEILAPYAEKNYQKHLKDAEEWVLPEKQEDYAWKKAQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSRFERE IQKAILNIRIKGLGSEHRTAIFPKLIFTLKRGLNLEEGTPNYDIKQLALECATKRMYPDVLSYDKIVDLTGSFKVPMGCR SFLQGWKDENGVEVNSGRMNLGVVTVNLPRIALESEGDMNKFWEIFNERMNIAEDALVYRVERTKEATPANAPILYQYGA FGHRLGKEESVDQLFKNRRATVSLGYIGLYEVATVFFGNSWESNPDAKEFTLDIIHDMKRRVEEWSDQYGYHFSIYSTPS ESLTDRFCRLDIDKFGSIPDITDKEYYTNSFHYDVRKNPTPFEKLDFEKVYPEAGASGGFIHYCEYPVLQQNPKALEAVW DYAYDRVGYLGTNTPIDRCYKCDFEGDFEPTERGFACPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEIAARVKH MNGSTIKIAGHQVTN >Mature_735_residues MIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERIITEIHSRFPQGIKIYEIQNI VEHELLEAKEYALAEEYITYRTQRDFERSKATDINFSIHKLLNKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLQML PKHVANAHQKGDIHYHDLDYSPYTPMTNCCLIDFKGMLENGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCSAD RIDEILAPYAEKNYQKHLKDAEEWVLPEKQEDYAWKKAQKDIYDAMQSLEYEINTLFTSNGQTPFTSLGFGLGTSRFERE IQKAILNIRIKGLGSEHRTAIFPKLIFTLKRGLNLEEGTPNYDIKQLALECATKRMYPDVLSYDKIVDLTGSFKVPMGCR SFLQGWKDENGVEVNSGRMNLGVVTVNLPRIALESEGDMNKFWEIFNERMNIAEDALVYRVERTKEATPANAPILYQYGA FGHRLGKEESVDQLFKNRRATVSLGYIGLYEVATVFFGNSWESNPDAKEFTLDIIHDMKRRVEEWSDQYGYHFSIYSTPS ESLTDRFCRLDIDKFGSIPDITDKEYYTNSFHYDVRKNPTPFEKLDFEKVYPEAGASGGFIHYCEYPVLQQNPKALEAVW DYAYDRVGYLGTNTPIDRCYKCDFEGDFEPTERGFACPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEIAARVKH MNGSTIKIAGHQVTN
Specific function: Unknown
COG id: COG1328
COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase
Gene ontology:
Cell location: Cytoplasm [C]
Metaboloic importance: Non_Essential [C]
Operon status: Not Known
Operon components: None
Similarity: Contains 1 glycine radical domain [H]
Homologues:
Organism=Escherichia coli, GI1790686, Length=725, Percent_Identity=51.8620689655172, Blast_Score=756, Evalue=0.0,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR005144 - InterPro: IPR001150 - InterPro: IPR019777 - InterPro: IPR012833 [H]
Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]
EC number: =1.17.4.2 [H]
Molecular weight: Translated: 83806; Mature: 83806
Theoretical pI: Translated: 5.67; Mature: 5.67
Prosite motif: PS51161 ATP_CONE ; PS00850 GLY_RADICAL_1 ; PS51149 GLY_RADICAL_2
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.6 %Cys (Translated Protein) 1.9 %Met (Translated Protein) 3.5 %Cys+Met (Translated Protein) 1.6 %Cys (Mature Protein) 1.9 %Met (Mature Protein) 3.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERI CCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITEIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDINFSIHK HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LLNKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLQMLPKHVANAHQKGDIHYHDLDY HCCCCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC SPYTPMTNCCLIDFKGMLENGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCSAD CCCCCCCCEEEEEEHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH RIDEILAPYAEKNYQKHLKDAEEWVLPEKQEDYAWKKAQKDIYDAMQSLEYEINTLFTSN HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECC GQTPFTSLGFGLGTSRFEREIQKAILNIRIKGLGSEHRTAIFPKLIFTLKRGLNLEEGTP CCCCHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC NYDIKQLALECATKRMYPDVLSYDKIVDLTGSFKVPMGCRSFLQGWKDENGVEVNSGRMN CCHHHHHHHHHHHHHHCHHHHCCHHHEECCCCCCCCHHHHHHHHCCCCCCCEEECCCEEE LGVVTVNLPRIALESEGDMNKFWEIFNERMNIAEDALVYRVERTKEATPANAPILYQYGA EEEEEEECCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCEEEECCC FGHRLGKEESVDQLFKNRRATVSLGYIGLYEVATVFFGNSWESNPDAKEFTLDIIHDMKR HHHHCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH RVEEWSDQYGYHFSIYSTPSESLTDRFCRLDIDKFGSIPDITDKEYYTNSFHYDVRKNPT HHHHHHHCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCC PFEKLDFEKVYPEAGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDRCY CHHHCCHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHE KCDFEGDFEPTERGFACPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEIAARVKH ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH MNGSTIKIAGHQVTN CCCCEEEEECCCCCC >Mature Secondary Structure MIALEEKITILPTLFVEKRDGRRVVFDVDKIDKALHTAADKVMDVTPLVEKRLNDLTERI CCCCCCCCEEEEEEEEECCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH ITEIHSRFPQGIKIYEIQNIVEHELLEAKEYALAEEYITYRTQRDFERSKATDINFSIHK HHHHHHHCCCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHH LLNKDQTVVNENANKDSDVFNTQRDLTAGIVGKSIGLQMLPKHVANAHQKGDIHYHDLDY HCCCCCHHHCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCC SPYTPMTNCCLIDFKGMLENGFKIGNAEVESPKSIQTATAQISQIIANVASSQYGGCSAD CCCCCCCCEEEEEEHHHHHCCCEECCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCHH RIDEILAPYAEKNYQKHLKDAEEWVLPEKQEDYAWKKAQKDIYDAMQSLEYEINTLFTSN HHHHHHHHHHHHHHHHHHCCHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEEECC GQTPFTSLGFGLGTSRFEREIQKAILNIRIKGLGSEHRTAIFPKLIFTLKRGLNLEEGTP CCCCHHHHCCCCCHHHHHHHHHHHHHHEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCC NYDIKQLALECATKRMYPDVLSYDKIVDLTGSFKVPMGCRSFLQGWKDENGVEVNSGRMN CCHHHHHHHHHHHHHHCHHHHCCHHHEECCCCCCCCHHHHHHHHCCCCCCCEEECCCEEE LGVVTVNLPRIALESEGDMNKFWEIFNERMNIAEDALVYRVERTKEATPANAPILYQYGA EEEEEEECCEEEECCCCCHHHHHHHHHHHHCHHHHHHHHHHHHHCCCCCCCCCEEEECCC FGHRLGKEESVDQLFKNRRATVSLGYIGLYEVATVFFGNSWESNPDAKEFTLDIIHDMKR HHHHCCCHHHHHHHHHCCCCEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHH RVEEWSDQYGYHFSIYSTPSESLTDRFCRLDIDKFGSIPDITDKEYYTNSFHYDVRKNPT HHHHHHHCCCEEEEEECCCCHHHHHHHHHCCHHHCCCCCCCCCCCCCCCCEEEECCCCCC PFEKLDFEKVYPEAGASGGFIHYCEYPVLQQNPKALEAVWDYAYDRVGYLGTNTPIDRCY CHHHCCHHHHCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCHHHHE KCDFEGDFEPTERGFACPNCGNSDPKTVDVVKRTCGYLGNPQARPMVNGRHKEIAARVKH ECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHH MNGSTIKIAGHQVTN CCCCEEEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: 8421692; 7610040; 9278503; 8083158; 7852304 [H]