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The map label for this gene is yecS [H]

Identifier: 116516529

GI number: 116516529

Start: 1345122

End: 1345763

Strand: Reverse

Name: yecS [H]

Synonym: SPD_1330

Alternate gene names: 116516529

Gene position: 1345763-1345122 (Counterclockwise)

Preceding gene: 116515949

Following gene: 116516161

Centisome position: 65.77

GC content: 41.43

Gene sequence:

>642_bases
ATGTCTTATTTATTTGAGATATTACCGAGTTTACTGAATGGTGCGAGCACGACTGTACAGGTCTTTGCACTGGTCTTGCT
ATTTTCGATTCCCTTGGGCGTTTTGATTGCCTTTGCCTTGCAAGTCCATTGGAAGCCCCTCCATTATCTGATTAACATTT
ACATCTGGGTTATGCGAGGAACCCCCTTACTCTTGCAACTGATTTTTATCTATTATGTGCTCCCAAGTATTGGGATTCGT
TTAGACCGCCTTCCTGCAGCTATTATTGCCTTTGTTCTCAACTATGCAGCTTACTTTGCAGAAATTTTCCGTGGGGGAAT
TGACACTATTCCAAGAGGACAGTATGAGGCCGCCAAGGTCTTGAAGTTTAGCCCTTTTGACAGAGTGCGCTATATTATCT
TGCCCCAAGTGACCAAGATCGTTCTTCCTAGTGTCTTTAATGAAGTTATGAGTTTGGTCAAGGATACTTCTTTGGTCTAT
GCTCTCGGAATTTCAGACCTTATCTTGGCTAGTCGAACAGCTGCTAACCGCGATGCTAGTCTAGTTCCTATGTTCTTGGC
AGGAGCCATTTATTTGATTTTGATTGGGATTGTGACAATTATTTCCAAAAAAGTTGAGAAGAAGTATAGTTATTATAGAT
AG

Upstream 100 bases:

>100_bases
ACGGTTTTTATTTGTATATGGTAGAATCTTTTTACAAAAATACTTGGTAATCTTGTTTATTCATGCTATAATAGGAACAA
TTACTTTTAGGAGGTGCAGT

Downstream 100 bases:

>100_bases
GAGGCTGCCATGTTAGAATTACGAAATATCAATAAAGTCTTTGGAGACAAACAAATCCTGTCTAATTTCAGTCTAAGTAT
TCCTGAAAAGCAAATCCTGG

Product: amino acid ABC transporter permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 213; Mature: 212

Protein sequence:

>213_residues
MSYLFEILPSLLNGASTTVQVFALVLLFSIPLGVLIAFALQVHWKPLHYLINIYIWVMRGTPLLLQLIFIYYVLPSIGIR
LDRLPAAIIAFVLNYAAYFAEIFRGGIDTIPRGQYEAAKVLKFSPFDRVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVY
ALGISDLILASRTAANRDASLVPMFLAGAIYLILIGIVTIISKKVEKKYSYYR

Sequences:

>Translated_213_residues
MSYLFEILPSLLNGASTTVQVFALVLLFSIPLGVLIAFALQVHWKPLHYLINIYIWVMRGTPLLLQLIFIYYVLPSIGIR
LDRLPAAIIAFVLNYAAYFAEIFRGGIDTIPRGQYEAAKVLKFSPFDRVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVY
ALGISDLILASRTAANRDASLVPMFLAGAIYLILIGIVTIISKKVEKKYSYYR
>Mature_212_residues
SYLFEILPSLLNGASTTVQVFALVLLFSIPLGVLIAFALQVHWKPLHYLINIYIWVMRGTPLLLQLIFIYYVLPSIGIRL
DRLPAAIIAFVLNYAAYFAEIFRGGIDTIPRGQYEAAKVLKFSPFDRVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVYA
LGISDLILASRTAANRDASLVPMFLAGAIYLILIGIVTIISKKVEKKYSYYR

Specific function: Probably part of the binding-protein-dependent transport system yecCS for an amino acid; probably responsible for the translocation of the substrate across the membrane [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1788226, Length=205, Percent_Identity=38.0487804878049, Blast_Score=136, Evalue=1e-33,
Organism=Escherichia coli, GI1787030, Length=210, Percent_Identity=30.4761904761905, Blast_Score=102, Evalue=1e-23,
Organism=Escherichia coli, GI1786873, Length=196, Percent_Identity=32.6530612244898, Blast_Score=100, Evalue=6e-23,
Organism=Escherichia coli, GI87082239, Length=209, Percent_Identity=32.0574162679426, Blast_Score=99, Evalue=2e-22,
Organism=Escherichia coli, GI1787086, Length=216, Percent_Identity=32.4074074074074, Blast_Score=96, Evalue=1e-21,
Organism=Escherichia coli, GI1788645, Length=208, Percent_Identity=29.8076923076923, Blast_Score=85, Evalue=4e-18,
Organism=Escherichia coli, GI1787087, Length=233, Percent_Identity=24.8927038626609, Blast_Score=83, Evalue=1e-17,
Organism=Escherichia coli, GI1788646, Length=215, Percent_Identity=28.8372093023256, Blast_Score=79, Evalue=2e-16,
Organism=Escherichia coli, GI48994930, Length=148, Percent_Identity=28.3783783783784, Blast_Score=64, Evalue=6e-12,
Organism=Escherichia coli, GI1786874, Length=178, Percent_Identity=24.7191011235955, Blast_Score=61, Evalue=6e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010065
- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 23967; Mature: 23836

Theoretical pI: Translated: 9.96; Mature: 9.96

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSYLFEILPSLLNGASTTVQVFALVLLFSIPLGVLIAFALQVHWKPLHYLINIYIWVMRG
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TPLLLQLIFIYYVLPSIGIRLDRLPAAIIAFVLNYAAYFAEIFRGGIDTIPRGQYEAAKV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LKFSPFDRVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVYALGISDLILASRTAANRDAS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LVPMFLAGAIYLILIGIVTIISKKVEKKYSYYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
>Mature Secondary Structure 
SYLFEILPSLLNGASTTVQVFALVLLFSIPLGVLIAFALQVHWKPLHYLINIYIWVMRG
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
TPLLLQLIFIYYVLPSIGIRLDRLPAAIIAFVLNYAAYFAEIFRGGIDTIPRGQYEAAKV
CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHH
LKFSPFDRVRYIILPQVTKIVLPSVFNEVMSLVKDTSLVYALGISDLILASRTAANRDAS
HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCH
LVPMFLAGAIYLILIGIVTIISKKVEKKYSYYR
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]