Click here to switch to the map view.

The map label for this gene is ypiA [H]

Identifier: 116515949

GI number: 116515949

Start: 1345909

End: 1347138

Strand: Reverse

Name: ypiA [H]

Synonym: SPD_1331

Alternate gene names: 116515949

Gene position: 1347138-1345909 (Counterclockwise)

Preceding gene: 116517014

Following gene: 116516529

Centisome position: 65.84

GC content: 40.57

Gene sequence:

>1230_bases
GTGAACAATAGTCAACAGATGTTACAGGCTTTGGAGGAGCAAGATTTAACTAAGGCTGAGCATTATTTCGCCAAAGCTTT
AGAAAATGATTCAAGTGATCTTCTGTATGAATTGGCAACTTATCTTGAAGGGATTGGTTTCTATCCTCAGGCCAAGGAAA
TTTACCTGAAAATTGTAGAGGATTTTCCAGAGGTTCATCTTAATCTAGCTGCAATTGCTAGCGAGGATGGTCAAATAGAA
GAAGCCTTTACCTATCTTGAGGAAATCCAAGCTGACAGTGACTGGTATGTCTCGTCTTTGGCTCTGAAGGCAGACCTTTA
CCAGCTGGAAGGTTTGACAGATGTGGCACGTGAGAAATTATTGGAGGCCTTGACCTACTCAGAGGATTCTCTCTTGATAT
TGGGTTTGGCAGAGTTGGATAGTGAGTTGGAAAATTACCAAGCGGCTATTCAAGCCTATGCCCAGTTAGATAATCGCTCG
ATTTATGAGCAAACGGGCATTTCCACCTATCAACGAATTGGCTTTGCCTATGCTCAGTTAGGGAAATTTGAAACGGCTAC
TGAGTTTTTAGAAAAAGCCCTGGAGTTAGAATACGATGACTTAACAGCTTTTGAGTTGGCCAGTCTTTATTTTGATCAAG
AAGAATATCAAAAAGCCACCCTCTACTTTAAGCAGCTTGATACCATTTCTCCTGACTTTGAAGGCTATGAGTATGGGTAC
AGTCAGGCTTTACATAAGGAACATCAAGTTCAAGAAGCCCTGCGTATCGCTAAGCAAGGATTAGAGAAAAATCCCTTTGA
AACTCGCCTCTTGCTAGCTGCTTCACAATTTTCTTATGAATTGCATGATGCTAGTGGTGCAGAAAATTATCTCCTTACTG
CAAAAGAAGACGCTGAGGATACAGAAGAAATCTTGCTTCGTTTAGCCACTATTTATCTGGAGCAGGAGCGTTATGAGGAT
ATTCTAGAATTGCAGAGTGAGGAGCCAGAAAATCTTTTGACCAAGTGGATGATTGCTCGTTCTTATCAAGAAATGGACGA
TTTGGATACTGCTTATGAGTATTATCAAGAGTTGTCAGGAGATTTGAAGGACAATCCAGAATTTCTGGAACACTATATCT
ATCTCTTGCGTGAATTGGGACATTTTGAAGAAGCAAAAGTCCATGCTCACACTTACTTAAAACTGGTTCCAGATGATGTG
CAAATGCAAGAACTGTTTGAGAGATTGTAA

Upstream 100 bases:

>100_bases
ATTCCGGTTTATGCCTCTGCTAAGGTTGTCATTTCAGCCATTTTCGAATGGTATAAGGTAGTCAGTGGTCTATATGAATT
AGAGGGTGAGGAAGTCAAGA

Downstream 100 bases:

>100_bases
GAATGTTTAAACATATAGAACTGTAGTTTATCTCTTTTGATAGCTACGGTTTTTATTTGTATATGGTAGAATCTTTTTAC
AAAAATACTTGGTAATCTTG

Product: TPR domain-containing protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 409; Mature: 409

Protein sequence:

>409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILELQSEEPENLLTKWMIARSYQEMDDLDTAYEYYQELSGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL

Sequences:

>Translated_409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILELQSEEPENLLTKWMIARSYQEMDDLDTAYEYYQELSGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL
>Mature_409_residues
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVEDFPEVHLNLAAIASEDGQIE
EAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKLLEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRS
IYEQTGISTYQRIGFAYAQLGKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAEDTEEILLRLATIYLEQERYED
ILELQSEEPENLLTKWMIARSYQEMDDLDTAYEYYQELSGDLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDV
QMQELFERL

Specific function: Unknown

COG id: COG0457

COG function: function code R; FOG: TPR repeat

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 9 TPR repeats [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001440
- InterPro:   IPR013026
- InterPro:   IPR011990
- InterPro:   IPR019734 [H]

Pfam domain/function: PF00515 TPR_1 [H]

EC number: NA

Molecular weight: Translated: 47510; Mature: 47510

Theoretical pI: Translated: 3.91; Mature: 3.91

Prosite motif: PS50005 TPR L=RR ; PS50293 TPR_REGION L=RR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQL
HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHH
GKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAED
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCH
TEEILLRLATIYLEQERYEDILELQSEEPENLLTKWMIARSYQEMDDLDTAYEYYQELSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFERL
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHC
>Mature Secondary Structure
MNNSQQMLQALEEQDLTKAEHYFAKALENDSSDLLYELATYLEGIGFYPQAKEIYLKIVE
CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
DFPEVHLNLAAIASEDGQIEEAFTYLEEIQADSDWYVSSLALKADLYQLEGLTDVAREKL
HHHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHH
LEALTYSEDSLLILGLAELDSELENYQAAIQAYAQLDNRSIYEQTGISTYQRIGFAYAQL
HHHHHCCCCCEEEEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHCHHHHHHHHHHHHHH
GKFETATEFLEKALELEYDDLTAFELASLYFDQEEYQKATLYFKQLDTISPDFEGYEYGY
CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCCCHHHHH
SQALHKEHQVQEALRIAKQGLEKNPFETRLLLAASQFSYELHDASGAENYLLTAKEDAED
HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCH
TEEILLRLATIYLEQERYEDILELQSEEPENLLTKWMIARSYQEMDDLDTAYEYYQELSG
HHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
DLKDNPEFLEHYIYLLRELGHFEEAKVHAHTYLKLVPDDVQMQELFERL
CCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHEEECCCCCHHHHHHHHC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377 [H]