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The map label for this gene is yfmR [H]

Identifier: 116516141

GI number: 116516141

Start: 1405604

End: 1407475

Strand: Reverse

Name: yfmR [H]

Synonym: SPD_1385

Alternate gene names: 116516141

Gene position: 1407475-1405604 (Counterclockwise)

Preceding gene: 116517000

Following gene: 116516314

Centisome position: 68.79

GC content: 43.64

Gene sequence:

>1872_bases
ATGAGTGATTTTATCGTTGAAAAACTAAGTAAATCCGTTGGTGACAAGACCGTTTTTAGGGATATTTCCTTTATTATCCA
TGACTTAGACAGAATTGGTTTAATCGGTGTCAATGGGACTGGCAAGACCACCCTTTTGGACGTCCTTTCTGGTGTTTCTG
GATTTGATGGGGATGTCAGTCCTTTTTCAGCTAAAAATGATTACCAGATTGGTTACTTGACTCAGGATCCTGATTTTGAT
GATAGAAAGACAGTTTTGGATACGGTTCTATCTAGTGAACTCAAGGAAATCCAGCTCATTCGTGAGTATGAATTGATTAT
GCTCGACTATAGTGAGGACAAGCAGGCGCGTTTGGAACGTGTCATGGCAGAGATGGACTCTCTCCAAGCTTGGGAAATCG
AAAGTCAGGTCAAGACCGTTCTTAGCAAATTGGGCATTCAAGACTTATCTACTCCTATTGGGGAATTGTCAGGTGGTCTG
AGAAGACGGGTACAGTTGGCACAAGTCTTACTTGGCAACCACGACCTCTTGCTTTTGGATGAGCCGACCAACCATCTGGA
TATTGCGATTATTGAGTGGCTGACCCTCTTTTTGAAAAATTCTAAGAAGACCGTCCTTTTTATCACTCACGATCGTTATT
TCTTAGACGCTTTGTCAACACGGATTTTCGAGTTGGATCGTGCAGGCTTGACCGAGTACCAGGGAAATTACCAGGACTAT
GTTCGCCTAAAGGCGGAACAGGATGAGCGCGACGCGGCTCTTCTTCACAAAAAAGAACAACTCTACAAACAAGAATTGGC
CTGGATGCGCAGACAACCGCAGGCGCGTGCGACCAAGCAGCAGGCCCGTATCAATCGATTCCATGATCTGAAAAAGAAAG
TTTCAGGCAGTAGTGCTGAGACAGACTTGACCATGAACTTTGAAACCAGTCGGATTGGGAAGAAAGTCATCGAGTTTCAG
GCTGTTTCCTTTGCCTATGAAAACAAGCCTATTTTGCAAGATTTTAATCTCTTGGTGCAGGCCAAAGACCGTATCGGAAT
CGTTGGGGACAATGGTGTTGGAAAATCAACCCTGCTCAACTTGATTGCAGGAAGTCTTGAGCCAACTAAAGGACAAGTTG
TGATTGGGGAAACTGTTCGCATCGCCTATTTCTCTCAGCAAATTGAGGGTTTGGATGAAAGCAAGAGAGTTATCAATTAC
CTGCAGGAAGTGGCAGAGGAGGTCAAGACCAGTGGCGGTTCTACGACTTCGATTGCAGAGTTGCTGGAGCAGTTCCTTTT
CCCACGTTCGACGCATGGAACCTTGATTGAGAAATTGTCAGGGGGTGAGAAAAAACGTCTTTATCTCCTCAAACTGCTTT
TGGAAAAACCAAATGTTCTTCTTTTAGACGAGCCAACCAATGACCTAGATATTGCAACTTTGACAGTCTTAGAGAATTTC
TTGCAAGGTTTTGCAGGTCCCGTTTTAACAGTCAGTCACGACCGCTATTTCTTGGATAAGGTAGCGACCAAGATTCTCGC
TTTTGAGGATGGCAAGATTCGTCCTTTCTTTGGTCATTACACCGACTATCTTGATGAAAAAGCTTTTGAAACAGATATGG
CCAATCAAGTGCAAAAGGTCGAAAAGGAAAAAGTGGTCAAGGTTCGAGAAGACAAGAAACGCATGACCTACCAAGAAAAG
CAGGAGTGGGCAAGTATTGAAGGTGATATTGAAACCTTGGAAAAACGTATCGCTGCTATTGAAGAGGAAATGCAGGCTAA
CGGCTCTGACTTTGGTAAGCTGGCTACTCTCCAAAAAGAATTGGATGAGAAAAATGAAGCACTCCTTGAAAAATACGAAC
GCTATGAGTATCTCAGTGAATTTGATAGTTAA

Upstream 100 bases:

>100_bases
CAGACTTGGGAGAGATTTTAACAGAGATTGAGTTTGCCATTGTCGATGGAGAATTGGAGAATAATCGTGAAGCCATCCAT
GCTTACCTGAGGGAGAAAAA

Downstream 100 bases:

>100_bases
GACTATTCGAAAATCAAAGTGCAAACTATGTCGGCTTCACATTGCCGACTCAAGTACAGCCTGTGACCGGCTTCCTAATT
TGCACTTTGATTTTTATTGA

Product: ABC transporter ATP-binding protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 623; Mature: 622

Protein sequence:

>623_residues
MSDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVSPFSAKNDYQIGYLTQDPDFD
DRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLERVMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGL
RRRVQLAQVLLGNHDLLLLDEPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDY
VRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAETDLTMNFETSRIGKKVIEFQ
AVSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLNLIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINY
LQEVAEEVKTSGGSTTSIAELLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENF
LQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKVEKEKVVKVREDKKRMTYQEK
QEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKELDEKNEALLEKYERYEYLSEFDS

Sequences:

>Translated_623_residues
MSDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVSPFSAKNDYQIGYLTQDPDFD
DRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLERVMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGL
RRRVQLAQVLLGNHDLLLLDEPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDY
VRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAETDLTMNFETSRIGKKVIEFQ
AVSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLNLIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINY
LQEVAEEVKTSGGSTTSIAELLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENF
LQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKVEKEKVVKVREDKKRMTYQEK
QEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKELDEKNEALLEKYERYEYLSEFDS
>Mature_622_residues
SDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVSPFSAKNDYQIGYLTQDPDFDD
RKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLERVMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGLR
RRVQLAQVLLGNHDLLLLDEPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDYV
RLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAETDLTMNFETSRIGKKVIEFQA
VSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLNLIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINYL
QEVAEEVKTSGGSTTSIAELLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENFL
QGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKVEKEKVVKVREDKKRMTYQEKQ
EWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKELDEKNEALLEKYERYEYLSEFDS

Specific function: Unknown

COG id: COG0488

COG function: function code R; ATPase components of ABC transporters with duplicated ATPase domains

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 2 ABC transporter domains [H]

Homologues:

Organism=Homo sapiens, GI148612853, Length=539, Percent_Identity=29.4990723562152, Blast_Score=209, Evalue=6e-54,
Organism=Homo sapiens, GI69354671, Length=550, Percent_Identity=30, Blast_Score=194, Evalue=1e-49,
Organism=Homo sapiens, GI10947135, Length=550, Percent_Identity=30, Blast_Score=194, Evalue=2e-49,
Organism=Homo sapiens, GI27881506, Length=544, Percent_Identity=29.2279411764706, Blast_Score=181, Evalue=2e-45,
Organism=Homo sapiens, GI10947137, Length=544, Percent_Identity=29.2279411764706, Blast_Score=180, Evalue=3e-45,
Organism=Homo sapiens, GI73747915, Length=226, Percent_Identity=27.8761061946903, Blast_Score=72, Evalue=1e-12,
Organism=Escherichia coli, GI2367384, Length=537, Percent_Identity=35.3817504655494, Blast_Score=312, Evalue=3e-86,
Organism=Escherichia coli, GI1787182, Length=623, Percent_Identity=33.5473515248796, Blast_Score=305, Evalue=6e-84,
Organism=Escherichia coli, GI1787041, Length=542, Percent_Identity=33.0258302583026, Blast_Score=266, Evalue=3e-72,
Organism=Escherichia coli, GI1789751, Length=582, Percent_Identity=30.5841924398625, Blast_Score=256, Evalue=3e-69,
Organism=Escherichia coli, GI1787164, Length=215, Percent_Identity=30.2325581395349, Blast_Score=79, Evalue=1e-15,
Organism=Escherichia coli, GI1789593, Length=225, Percent_Identity=26.2222222222222, Blast_Score=72, Evalue=1e-13,
Organism=Escherichia coli, GI1786563, Length=206, Percent_Identity=29.126213592233, Blast_Score=71, Evalue=3e-13,
Organism=Escherichia coli, GI1787758, Length=220, Percent_Identity=27.2727272727273, Blast_Score=69, Evalue=8e-13,
Organism=Escherichia coli, GI1786698, Length=206, Percent_Identity=28.6407766990291, Blast_Score=68, Evalue=1e-12,
Organism=Escherichia coli, GI87081782, Length=189, Percent_Identity=31.2169312169312, Blast_Score=67, Evalue=4e-12,
Organism=Escherichia coli, GI1788506, Length=260, Percent_Identity=26.1538461538462, Blast_Score=66, Evalue=6e-12,
Organism=Escherichia coli, GI48994883, Length=238, Percent_Identity=23.9495798319328, Blast_Score=66, Evalue=7e-12,
Organism=Escherichia coli, GI87081709, Length=212, Percent_Identity=25.4716981132075, Blast_Score=65, Evalue=1e-11,
Organism=Escherichia coli, GI1789891, Length=209, Percent_Identity=22.488038277512, Blast_Score=65, Evalue=2e-11,
Organism=Escherichia coli, GI1788165, Length=225, Percent_Identity=28, Blast_Score=63, Evalue=6e-11,
Organism=Escherichia coli, GI48994997, Length=191, Percent_Identity=26.1780104712042, Blast_Score=62, Evalue=8e-11,
Organism=Caenorhabditis elegans, GI17559834, Length=559, Percent_Identity=30.0536672629696, Blast_Score=219, Evalue=3e-57,
Organism=Caenorhabditis elegans, GI17553372, Length=539, Percent_Identity=32.4675324675325, Blast_Score=201, Evalue=1e-51,
Organism=Caenorhabditis elegans, GI17555318, Length=549, Percent_Identity=27.8688524590164, Blast_Score=181, Evalue=1e-45,
Organism=Caenorhabditis elegans, GI17558664, Length=329, Percent_Identity=24.9240121580547, Blast_Score=71, Evalue=2e-12,
Organism=Caenorhabditis elegans, GI17569145, Length=295, Percent_Identity=26.4406779661017, Blast_Score=68, Evalue=2e-11,
Organism=Caenorhabditis elegans, GI115533592, Length=174, Percent_Identity=28.735632183908, Blast_Score=68, Evalue=2e-11,
Organism=Saccharomyces cerevisiae, GI6321121, Length=542, Percent_Identity=31.9188191881919, Blast_Score=222, Evalue=1e-58,
Organism=Saccharomyces cerevisiae, GI6320874, Length=512, Percent_Identity=31.25, Blast_Score=193, Evalue=6e-50,
Organism=Saccharomyces cerevisiae, GI6323278, Length=384, Percent_Identity=27.8645833333333, Blast_Score=138, Evalue=3e-33,
Organism=Saccharomyces cerevisiae, GI6324314, Length=367, Percent_Identity=27.7929155313352, Blast_Score=129, Evalue=2e-30,
Organism=Saccharomyces cerevisiae, GI6325030, Length=377, Percent_Identity=28.1167108753316, Blast_Score=120, Evalue=7e-28,
Organism=Drosophila melanogaster, GI24666836, Length=543, Percent_Identity=31.4917127071823, Blast_Score=221, Evalue=9e-58,
Organism=Drosophila melanogaster, GI24641342, Length=555, Percent_Identity=29.009009009009, Blast_Score=216, Evalue=5e-56,
Organism=Drosophila melanogaster, GI24642252, Length=512, Percent_Identity=30.6640625, Blast_Score=196, Evalue=5e-50,
Organism=Drosophila melanogaster, GI18859989, Length=512, Percent_Identity=30.6640625, Blast_Score=196, Evalue=5e-50,
Organism=Drosophila melanogaster, GI17136662, Length=218, Percent_Identity=28.8990825688073, Blast_Score=70, Evalue=4e-12,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003439
- InterPro:   IPR017871
- InterPro:   IPR003593 [H]

Pfam domain/function: PF00005 ABC_tran [H]

EC number: NA

Molecular weight: Translated: 70978; Mature: 70846

Theoretical pI: Translated: 4.79; Mature: 4.79

Prosite motif: PS50893 ABC_TRANSPORTER_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVS
CCHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCCCCCCCC
PFSAKNDYQIGYLTQDPDFDDRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLER
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHH
VMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGLRRRVQLAQVLLGNHDLLLLD
HHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
EPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDY
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
VRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
TDLTMNFETSRIGKKVIEFQAVSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLN
CEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCEEEECCCCCCHHHHHH
LIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINYLQEVAEEVKTSGGSTTSIAE
HHHCCCCCCCCCEEECCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENF
HHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
LQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKV
HHHHCCCEEEEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKEKVVKVREDKKRMTYQEKQEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDEKNEALLEKYERYEYLSEFDS
HHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
SDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVS
CHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCEEEEECCCCHHHHHHHHHCCCCCCCCCC
PFSAKNDYQIGYLTQDPDFDDRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLER
CCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEEEEECCCCHHHHHHH
VMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGLRRRVQLAQVLLGNHDLLLLD
HHHHHHCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEE
EPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDY
CCCCCHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHHHHHHHHHHCCCHHHCCCHHHH
VRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAE
EEEECCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCC
TDLTMNFETSRIGKKVIEFQAVSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLN
CEEEEECCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHEEECCCEEEECCCCCCHHHHHH
LIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINYLQEVAEEVKTSGGSTTSIAE
HHHCCCCCCCCCEEECCEEEHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHH
LLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENF
HHHHHCCCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHH
LQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKV
HHHHCCCEEEEECCHHHHHHHHHHHHEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
EKEKVVKVREDKKRMTYQEKQEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKE
HHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHH
LDEKNEALLEKYERYEYLSEFDS
HHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9141694; 9384377 [H]