Definition Lactobacillus casei ATCC 334, complete genome.
Accession NC_008526
Length 2,895,264

Click here to switch to the map view.

The map label for this gene is 116495782

Identifier: 116495782

GI number: 116495782

Start: 2327500

End: 2328600

Strand: Direct

Name: 116495782

Synonym: LSEI_2330

Alternate gene names: NA

Gene position: 2327500-2328600 (Clockwise)

Preceding gene: 116495781

Following gene: 116495783

Centisome position: 80.39

GC content: 49.86

Gene sequence:

>1101_bases
ATGGGGACACAATTCGCCTTTGACTGGCGCCAAATCATTCATTCACGAAAAAACATGGCCGTACTCGGGTTGTTCATGGC
CGCTTTTATCGTGGCGTTTTTCGCTTTAAGTTGGACCAAACGGCTCGATGTCACTCAAACATCACAAGCAACAGCCAACG
CCGCGTTGGCCAACTATGCTGAATATAATCTGGATACGTTGAGTCAAGCACAAAAACCATTATTGGCTAATCTTGACGCC
CAAAATTCAGCAACCGGCGTTATTGGTTTGGGCCTGCAGCTTGATGAGCCTGACACTACCCGTAATGGGCTGCTTAGTTT
ACGTACAGCGCAGCTAGCCATGCGCCAACATCATTACAAAGCGCTCAACACGATGCCACTGCCACCGTTGCATCAGCTTA
CTGGCGATGTGCGGAGCCTGAACGTTTTAAAATCTGAAGGCCGGCCGGCTGCAACAAGCGTTAGCACGAGTGCTTCTTAT
ATTGTTTTGGTGTTACCTTATCTCGGCTGGATCATTGGCGCCGCTGCGATATTGCTCAGTTGCGACAGTTGGATCGAGCG
GCGGCGACACCGGACACTCATCACTGCTCGTCCTTTGACAGCTGGCCTTGCGGGGAGCAGCCGCCTACTAATGCTTACCG
GGTTTTACATCTTAACGCTGCTTGCCGGTTTTGCTTTGATGGTTGCGACACCAGCCCTGATAGCTGGCCTAGGTGACTTC
AATTATCCGATCGCCGTCATGGGTACAGCCATACTGCCATTGTGGCAATACATACTTTTGTTTGGCGGCCTGACAATCTT
AGCCGGTATTTGGCTCATCAGTTTTAGTATGCTAGTCAATGCTTGGATCACCAACGTTTATCTGACCGCCTTTATCGTCA
TGGCAGCCGGATTATTGCCAGTCATGCTGCCACAGCTCTTCCATTTTCTGTGGTTCCTGCCAATGCCATATCTAGACAGT
TACGCGACATTAAGCGGTACCTTAGTGGATCGCTTGAACCAGCCACTTGCTAGCGTCGTCATTGGCACTGGTTTGCTGTT
TCTCTGGACCTTTGTTAATCTCTTTATCTTTGGCCTACGTGTCAAAAAGGAGGCAGCATGA

Upstream 100 bases:

>100_bases
TTTGATTAAAGAAAAATGTGGTATTCTGGTGACACATCGTAACCACGCGTTTTTTGATACCGGAGTCATCTCAGAAAACG
CTCACTTTGGAGGGCAATGT

Downstream 100 bases:

>100_bases
TGGCTTATTTTCGTTTTCAGTTCCACCAGCTGCTGACTAACCGGAAAAATCTAGCGGTAATTGGTATCGCCTTAGTTGCC
CTGATCTGCCAATTTGTCTT

Product: hypothetical protein

Products: NA

Alternate protein names: None

Number of amino acids: Translated: 366; Mature: 365

Protein sequence:

>366_residues
MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDA
QNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASY
IVLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF
NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDS
YATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA

Sequences:

>Translated_366_residues
MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDA
QNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASY
IVLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF
NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDS
YATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA
>Mature_365_residues
GTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYAEYNLDTLSQAQKPLLANLDAQ
NSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYKALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYI
VLVLPYLGWIIGAAAILLSCDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDFN
YPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLPVMLPQLFHFLWFLPMPYLDSY
ATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLRVKKEAA

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 40080; Mature: 39949

Theoretical pI: Translated: 9.90; Mature: 9.90

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYA
CCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EYNLDTLSQAQKPLLANLDAQNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYK
HCCHHHHHHHCCCHHHCCCCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYIVLVLPYLGWIIGAAAILLS
HHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
CDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF
HHHHHHHHHHHHEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLP
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLPQLFHFLWFLPMPYLDSYATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VKKEAA
HHHCCC
>Mature Secondary Structure 
GTQFAFDWRQIIHSRKNMAVLGLFMAAFIVAFFALSWTKRLDVTQTSQATANAALANYA
CCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
EYNLDTLSQAQKPLLANLDAQNSATGVIGLGLQLDEPDTTRNGLLSLRTAQLAMRQHHYK
HCCHHHHHHHCCCHHHCCCCCCCCCEEEEECEEECCCCCCHHHHHHHHHHHHHHHHHHHH
ALNTMPLPPLHQLTGDVRSLNVLKSEGRPAATSVSTSASYIVLVLPYLGWIIGAAAILLS
HHCCCCCCCHHHHHCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
CDSWIERRRHRTLITARPLTAGLAGSSRLLMLTGFYILTLLAGFALMVATPALIAGLGDF
HHHHHHHHHHHHEEEECCHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
NYPIAVMGTAILPLWQYILLFGGLTILAGIWLISFSMLVNAWITNVYLTAFIVMAAGLLP
CCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
VMLPQLFHFLWFLPMPYLDSYATLSGTLVDRLNQPLASVVIGTGLLFLWTFVNLFIFGLR
HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHH
VKKEAA
HHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA