Click here to switch to the map view.

The map label for this gene is ytrA [H]

Identifier: 116495630

GI number: 116495630

Start: 2166924

End: 2167319

Strand: Direct

Name: ytrA [H]

Synonym: LSEI_2175

Alternate gene names: 116495630

Gene position: 2166924-2167319 (Clockwise)

Preceding gene: 116495629

Following gene: 116495631

Centisome position: 74.84

GC content: 45.45

Gene sequence:

>396_bases
ATGCGGATAGTTATTTCGAATCAATCCGGCAAACCGATTTATGAGCAAATTGAAGACCAGATCAAGACTGCGATTCTTTC
TGGTCAATTAAAGGTGAATGAACAACTGCCATCAATTCGCAGTCTGGCAAAAGATTTACGGATCAGTGTGATCACCACCA
CCCGCGCTTATCACGAACTCGAAGCAGCCGGATTCATTACGAATGTGCAAGGCAAAGGCGCCTATGTTTTGGGTCAAGAC
AGTGCACTTGTGAAGGAAAACGCTTTGCGTGAAATTGAGACCTATCTGAATCAAGCCATCGATACTGCCAAAATGGCGCG
CATTGCACCTGAAGAACTACACACGATGTTGGATACATTGATGCACACGGAGGGAGACACTGACAATGACAACTGA

Upstream 100 bases:

>100_bases
TATTCAGATGGCGGCATGTTGAAAGCTTTCAAACGCTCATGGCAACTACAACGCGCCGCCCGCAAACCTAAACCTGTTAA
ATCATGAAACGAGGTTAACC

Downstream 100 bases:

>100_bases
TCTGCTAACCGTTACGAACTTGACCAAACGCTATGCCGATTATCAACTTGCTAATGTCAGTTTTAGTTTACCCGCTGGCT
ACATCATGGGCTTCATTGGT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 131; Mature: 131

Protein sequence:

>131_residues
MRIVISNQSGKPIYEQIEDQIKTAILSGQLKVNEQLPSIRSLAKDLRISVITTTRAYHELEAAGFITNVQGKGAYVLGQD
SALVKENALREIETYLNQAIDTAKMARIAPEELHTMLDTLMHTEGDTDNDN

Sequences:

>Translated_131_residues
MRIVISNQSGKPIYEQIEDQIKTAILSGQLKVNEQLPSIRSLAKDLRISVITTTRAYHELEAAGFITNVQGKGAYVLGQD
SALVKENALREIETYLNQAIDTAKMARIAPEELHTMLDTLMHTEGDTDNDN
>Mature_131_residues
MRIVISNQSGKPIYEQIEDQIKTAILSGQLKVNEQLPSIRSLAKDLRISVITTTRAYHELEAAGFITNVQGKGAYVLGQD
SALVKENALREIETYLNQAIDTAKMARIAPEELHTMLDTLMHTEGDTDNDN

Specific function: Negatively regulates ABC transporter complex ytrBCDEF that plays a role in acetoin utilization during stationary phase and sporulation [H]

COG id: COG1725

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 14556; Mature: 14556

Theoretical pI: Translated: 4.75; Mature: 4.75

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRIVISNQSGKPIYEQIEDQIKTAILSGQLKVNEQLPSIRSLAKDLRISVITTTRAYHEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHEEEEEEHHHHHHHH
EAAGFITNVQGKGAYVLGQDSALVKENALREIETYLNQAIDTAKMARIAPEELHTMLDTL
HHHCCEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MHTEGDTDNDN
HHCCCCCCCCC
>Mature Secondary Structure
MRIVISNQSGKPIYEQIEDQIKTAILSGQLKVNEQLPSIRSLAKDLRISVITTTRAYHEL
CEEEEECCCCCHHHHHHHHHHHHHHHCCCEEECCCCHHHHHHHHHHEEEEEEHHHHHHHH
EAAGFITNVQGKGAYVLGQDSALVKENALREIETYLNQAIDTAKMARIAPEELHTMLDTL
HHHCCEECCCCCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
MHTEGDTDNDN
HHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377 [H]