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The map label for this gene is sodA [H]

Identifier: 116495315

GI number: 116495315

Start: 1846807

End: 1847424

Strand: Direct

Name: sodA [H]

Synonym: LSEI_1848

Alternate gene names: 116495315

Gene position: 1846807-1847424 (Clockwise)

Preceding gene: 116495314

Following gene: 116495317

Centisome position: 63.79

GC content: 46.44

Gene sequence:

>618_bases
ATGACATTTGTTTTGCCAGATTTACCTTTTGACTACGCAGCTCTTGAACCTTACATTGACGCAACAACGATGCACCTTCA
CCATGACAAGCATCATCAGACATACATTGATAAACTTAATGCCAGTTTAGATGGTGTCCCTCAGGCGGCCGGCAAATCCA
TTGAGCAACTATTGACAGGGCTTGATGCGCTGCCAGAAAGCGTGCGCGTTTCCGTCCGGAACAATGGCGGCGGACACTAT
AATCACTCATTGTTTTGGACGATGCTGAGTCCTGAAAGCACCATCAAACCGGACGGCCAATTATTAGCAGATCTTGAAAG
TACCTTCGATTCATTTGACAAGTTCAAAGCCGAATTCAGTCAAGCAGCTTTATCTGTTTTTGGATCAGGTTGGGCCTGGC
TTGTCAAAGACAACGCGACCTTAAAAATTGTGACGACAGCAAATCAAGATTCACCAATCACGTATCATCAGTACCCGCTG
CTAGGCTTGGATGTCTGGGAGCACGCGTATTACTTGCATTATCAAAATCGCCGACCAGAATATGTGGACGCCTTCTTCAA
GGTCATCAACTGGCAGACGGTTGAAAATCGCCTGATGCATCCCGATACAAACGCCTGA

Upstream 100 bases:

>100_bases
ATTAACATGAGCAAGTTATTAGGCTGGCCATTCTTCAACATGCTAAAGTTACTTATAGTAAGTGTGTGACGCTGTCCTCA
AACAAGAAAGGTTGATTCCT

Downstream 100 bases:

>100_bases
CGATGTTTGGTCACTAACTTTACTAAAAGCCGAAGTGCAAACACATTTTGCACTTCGGCTTTTTTTCATGTCTTCGTCTG
AATCTACTGCACGTCATACT

Product: superoxide dismutase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MTFVLPDLPFDYAALEPYIDATTMHLHHDKHHQTYIDKLNASLDGVPQAAGKSIEQLLTGLDALPESVRVSVRNNGGGHY
NHSLFWTMLSPESTIKPDGQLLADLESTFDSFDKFKAEFSQAALSVFGSGWAWLVKDNATLKIVTTANQDSPITYHQYPL
LGLDVWEHAYYLHYQNRRPEYVDAFFKVINWQTVENRLMHPDTNA

Sequences:

>Translated_205_residues
MTFVLPDLPFDYAALEPYIDATTMHLHHDKHHQTYIDKLNASLDGVPQAAGKSIEQLLTGLDALPESVRVSVRNNGGGHY
NHSLFWTMLSPESTIKPDGQLLADLESTFDSFDKFKAEFSQAALSVFGSGWAWLVKDNATLKIVTTANQDSPITYHQYPL
LGLDVWEHAYYLHYQNRRPEYVDAFFKVINWQTVENRLMHPDTNA
>Mature_204_residues
TFVLPDLPFDYAALEPYIDATTMHLHHDKHHQTYIDKLNASLDGVPQAAGKSIEQLLTGLDALPESVRVSVRNNGGGHYN
HSLFWTMLSPESTIKPDGQLLADLESTFDSFDKFKAEFSQAALSVFGSGWAWLVKDNATLKIVTTANQDSPITYHQYPLL
GLDVWEHAYYLHYQNRRPEYVDAFFKVINWQTVENRLMHPDTNA

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=47.2361809045226, Blast_Score=184, Evalue=4e-47,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=47.2361809045226, Blast_Score=184, Evalue=4e-47,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=38.6934673366834, Blast_Score=136, Evalue=1e-32,
Organism=Escherichia coli, GI1790342, Length=204, Percent_Identity=50.4901960784314, Blast_Score=219, Evalue=1e-58,
Organism=Escherichia coli, GI1787946, Length=199, Percent_Identity=41.7085427135678, Blast_Score=168, Evalue=2e-43,
Organism=Caenorhabditis elegans, GI17506561, Length=198, Percent_Identity=42.4242424242424, Blast_Score=166, Evalue=8e-42,
Organism=Caenorhabditis elegans, GI17569479, Length=198, Percent_Identity=43.4343434343434, Blast_Score=164, Evalue=3e-41,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=37.1980676328502, Blast_Score=137, Evalue=1e-33,
Organism=Drosophila melanogaster, GI17136812, Length=198, Percent_Identity=43.4343434343434, Blast_Score=164, Evalue=5e-41,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23297; Mature: 23166

Theoretical pI: Translated: 5.43; Mature: 5.43

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.5 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTFVLPDLPFDYAALEPYIDATTMHLHHDKHHQTYIDKLNASLDGVPQAAGKSIEQLLTG
CEEECCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LDALPESVRVSVRNNGGGHYNHSLFWTMLSPESTIKPDGQLLADLESTFDSFDKFKAEFS
HHCCCCCEEEEEECCCCCEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAALSVFGSGWAWLVKDNATLKIVTTANQDSPITYHQYPLLGLDVWEHAYYLHYQNRRPE
HHHHHHHCCCEEEEEECCCEEEEEEECCCCCCEEEECCCEECHHHHHHEEEEEECCCCCH
YVDAFFKVINWQTVENRLMHPDTNA
HHHHHHHHHHHHHHHHCCCCCCCCC
>Mature Secondary Structure 
TFVLPDLPFDYAALEPYIDATTMHLHHDKHHQTYIDKLNASLDGVPQAAGKSIEQLLTG
EEECCCCCCCHHHHCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHHH
LDALPESVRVSVRNNGGGHYNHSLFWTMLSPESTIKPDGQLLADLESTFDSFDKFKAEFS
HHCCCCCEEEEEECCCCCEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
QAALSVFGSGWAWLVKDNATLKIVTTANQDSPITYHQYPLLGLDVWEHAYYLHYQNRRPE
HHHHHHHCCCEEEEEECCCEEEEEEECCCCCCEEEECCCEECHHHHHHEEEEEECCCCCH
YVDAFFKVINWQTVENRLMHPDTNA
HHHHHHHHHHHHHHHHCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]