| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495312
Identifier: 116495312
GI number: 116495312
Start: 1844468
End: 1845502
Strand: Direct
Name: 116495312
Synonym: LSEI_1845
Alternate gene names: NA
Gene position: 1844468-1845502 (Clockwise)
Preceding gene: 116495309
Following gene: 116495313
Centisome position: 63.71
GC content: 47.15
Gene sequence:
>1035_bases ATGAAAAGAATCGCTTTGTTTGCACTAATGGTGCTAGTCATCAGTCCATTTCTCATTGCAGCAGGGCAAAAGACTACCGC AACAACACCAGAGTTTGCTGTTACGCCTGTGCTGCCAAGTAATCAAAAACAGGCAGACGCAGGCTATTTTGACTTGCAGG TCGATCCTGGCCAACAAGAAAATTTGCAACTTCGCATCAGCAACCTATCTGATCAGGTGCAAACTTATACAATTGCCGTG AACCCTGCTTATACCACCGATAGCGGTGCCATCGCCTTTGATCGCGCTATGCCGCCTTTGAACCAAGATGCACGCCGTTT GAATACGCTCATTAGCGGGCCGGAAAAAGTCAGTGTACCAGCCAAAACAGAAAAATTGGTCACTTATATATTAAAAGCAC CGAGCCAGCATTTTATTGGCGTTATTTCTGGCGGTTTCTATGTGTCTCCTGAAAATGACTCCAGCACCAACAAGTCGGTA AGCGGCGTTCGCTTCACAAATCGTTTTGCTATCGGGATCACCACTATTTTGCGCCAAGATTTCAAGACGCCTAATCCGCC ACTACTGGCAATGACAAAAGCAGGCATTGGTACGATTAACCACTATGCCGCCGTCCAAGCAACCATCAGCAATCCTTCTG GCAATCAGTTCGGTGACATCACGAGTGACTATGCCTTAAGCAAAACAGGAACAAAAAAGGCCTTGATAACCGGTCATTTT GTGGGGCAAGCCGTCGCTCCGCACTCATTTTTCACCCAAAGCATCCTGCTCAATGACCGCAAACTCATGGCTGGTGACTA TTCCCTCAAATGGACAGCTAAATCAGGCGACTTTTCTTGGACAAAAACACTTGCCTTTCACTATAGCGGTCATTTACCAA AAAACACCCTACAACCTGTTGTCAACAAACCAAAGACAAAAGCACCTGACAATCCACAACTGCCTTGGATCATTACTGGT ATCGCCATTGCGCTTCTCCTCATCTTGACCGGTACATGGGGCTGGAGCACTTGGCATCGGCGGCATAACCAGTAG
Upstream 100 bases:
>100_bases TGCAGATAGTCACTGACAACTATCTGCTACATAAAGTTGGATAAAAACATCCACCGATACCGCTTCGACGACGGTATTAG CGGTCTGTGGAGGGTTTGTC
Downstream 100 bases:
>100_bases AAAAACGTGCTGCCTGCTCACGATTGGCTTATGATAAAGGGAGAGCGTGAACTGATGCGGTTAGAAACCGGAACATAAGT GGGCTGGGACGCGATGACTG
Product: cell surface protein
Products: NA
Alternate protein names: C-Terminal Membrane Anchored Cell Surface Protein; Secreted Protein
Number of amino acids: Translated: 344; Mature: 344
Protein sequence:
>344_residues MKRIALFALMVLVISPFLIAAGQKTTATTPEFAVTPVLPSNQKQADAGYFDLQVDPGQQENLQLRISNLSDQVQTYTIAV NPAYTTDSGAIAFDRAMPPLNQDARRLNTLISGPEKVSVPAKTEKLVTYILKAPSQHFIGVISGGFYVSPENDSSTNKSV SGVRFTNRFAIGITTILRQDFKTPNPPLLAMTKAGIGTINHYAAVQATISNPSGNQFGDITSDYALSKTGTKKALITGHF VGQAVAPHSFFTQSILLNDRKLMAGDYSLKWTAKSGDFSWTKTLAFHYSGHLPKNTLQPVVNKPKTKAPDNPQLPWIITG IAIALLLILTGTWGWSTWHRRHNQ
Sequences:
>Translated_344_residues MKRIALFALMVLVISPFLIAAGQKTTATTPEFAVTPVLPSNQKQADAGYFDLQVDPGQQENLQLRISNLSDQVQTYTIAV NPAYTTDSGAIAFDRAMPPLNQDARRLNTLISGPEKVSVPAKTEKLVTYILKAPSQHFIGVISGGFYVSPENDSSTNKSV SGVRFTNRFAIGITTILRQDFKTPNPPLLAMTKAGIGTINHYAAVQATISNPSGNQFGDITSDYALSKTGTKKALITGHF VGQAVAPHSFFTQSILLNDRKLMAGDYSLKWTAKSGDFSWTKTLAFHYSGHLPKNTLQPVVNKPKTKAPDNPQLPWIITG IAIALLLILTGTWGWSTWHRRHNQ >Mature_344_residues MKRIALFALMVLVISPFLIAAGQKTTATTPEFAVTPVLPSNQKQADAGYFDLQVDPGQQENLQLRISNLSDQVQTYTIAV NPAYTTDSGAIAFDRAMPPLNQDARRLNTLISGPEKVSVPAKTEKLVTYILKAPSQHFIGVISGGFYVSPENDSSTNKSV SGVRFTNRFAIGITTILRQDFKTPNPPLLAMTKAGIGTINHYAAVQATISNPSGNQFGDITSDYALSKTGTKKALITGHF VGQAVAPHSFFTQSILLNDRKLMAGDYSLKWTAKSGDFSWTKTLAFHYSGHLPKNTLQPVVNKPKTKAPDNPQLPWIITG IAIALLLILTGTWGWSTWHRRHNQ
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 37524; Mature: 37524
Theoretical pI: Translated: 10.33; Mature: 10.33
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MKRIALFALMVLVISPFLIAAGQKTTATTPEFAVTPVLPSNQKQADAGYFDLQVDPGQQE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCC NLQLRISNLSDQVQTYTIAVNPAYTTDSGAIAFDRAMPPLNQDARRLNTLISGPEKVSVP CEEEEEECCCCCEEEEEEEECCCEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECC AKTEKLVTYILKAPSQHFIGVISGGFYVSPENDSSTNKSVSGVRFTNRFAIGITTILRQD CHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEECEEEHHHHHHHHHH FKTPNPPLLAMTKAGIGTINHYAAVQATISNPSGNQFGDITSDYALSKTGTKKALITGHF CCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEEEEEEH VGQAVAPHSFFTQSILLNDRKLMAGDYSLKWTAKSGDFSWTKTLAFHYSGHLPKNTLQPV HHCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHH VNKPKTKAPDNPQLPWIITGIAIALLLILTGTWGWSTWHRRHNQ HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC >Mature Secondary Structure MKRIALFALMVLVISPFLIAAGQKTTATTPEFAVTPVLPSNQKQADAGYFDLQVDPGQQE CCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEECCCCCCCCCCCCCEEEEEECCCCCC NLQLRISNLSDQVQTYTIAVNPAYTTDSGAIAFDRAMPPLNQDARRLNTLISGPEKVSVP CEEEEEECCCCCEEEEEEEECCCEECCCCCEEECCCCCCCCHHHHHHHHHHCCCCEEECC AKTEKLVTYILKAPSQHFIGVISGGFYVSPENDSSTNKSVSGVRFTNRFAIGITTILRQD CHHHHHHHHHHHCCCCCEEEEEECCEEECCCCCCCCCCCCCCEEEECEEEHHHHHHHHHH FKTPNPPLLAMTKAGIGTINHYAAVQATISNPSGNQFGDITSDYALSKTGTKKALITGHF CCCCCCCEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEECCCCCCEEEEEEEH VGQAVAPHSFFTQSILLNDRKLMAGDYSLKWTAKSGDFSWTKTLAFHYSGHLPKNTLQPV HHCCCCCHHHHHHHHHCCCCEEEECCEEEEEEECCCCCCEEEEEEEEECCCCCHHHHHHH VNKPKTKAPDNPQLPWIITGIAIALLLILTGTWGWSTWHRRHNQ HCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA