| Definition | Lactobacillus casei ATCC 334, complete genome. |
|---|---|
| Accession | NC_008526 |
| Length | 2,895,264 |
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The map label for this gene is 116495313
Identifier: 116495313
GI number: 116495313
Start: 1845803
End: 1846378
Strand: Direct
Name: 116495313
Synonym: LSEI_1846
Alternate gene names: NA
Gene position: 1845803-1846378 (Clockwise)
Preceding gene: 116495312
Following gene: 116495314
Centisome position: 63.75
GC content: 44.1
Gene sequence:
>576_bases ATGTCAAACAATCGCATGCTCGGAAATGAGTTTCAAACAGCATATGAAAGTGCTGGCGGAACGGATATTTTAAAATTTTT AGCGAATGTCAAGCAGGCATTCCAGTGCATTACGGATTTAACTGCACGAATCACTGGTATGCCCGATTCGGTTAAAAGTG AGTCTGTCTCTCAGTTATTAGTTCAACAATTGGATCAGACAACCTTCGCCGAAAGTGCCGTGCGTCAATGGGAAGACGAT TTGCATCGCTTTGCTGCTTATCTCACACCACTAGAACCACCTATCGCAATTCTTGATAGTTGGGATACATTAAATGACTT TTTGGAAGCGAATCAAGCATTGTTGAGTTCATTGCAAAATGTGCCTCTATTGACCCAAGAAACTCAAGAAGTCAAAACAA CATCGCAGTTGTTCGTCTATCCAGCAGAACCCCTATTCCAAGTCGTTCAGGCCGACACTGGCGAAAGCGACTCAATTGAT TTGGCCGGTTTGGCAGATGCTGATCCTGAATGTGTCGCTGAAATTGCGCAGAATCACGGTGTTACACCTTTTGCAGCGTT TAATGCCCAGCCTTGA
Upstream 100 bases:
>100_bases AGTGGCCTCAAATGCAATGATGCGCCGCCATGGTCATTGTGCTCGAGGTCCTTGTGAGACGGTTTAGGCGTCAGTGAGCA CGTTTAAAGGAGGACTTCCC
Downstream 100 bases:
>100_bases TTTTAGGCTGTCAATCCTGTATGCTTGACAGGTTAAATTATGAAAAAGTGAGGTGCTAAAACATGCGGAATAACATCATC TTAGGCAACAATGAAACCGG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 191; Mature: 190
Protein sequence:
>191_residues MSNNRMLGNEFQTAYESAGGTDILKFLANVKQAFQCITDLTARITGMPDSVKSESVSQLLVQQLDQTTFAESAVRQWEDD LHRFAAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQNVPLLTQETQEVKTTSQLFVYPAEPLFQVVQADTGESDSID LAGLADADPECVAEIAQNHGVTPFAAFNAQP
Sequences:
>Translated_191_residues MSNNRMLGNEFQTAYESAGGTDILKFLANVKQAFQCITDLTARITGMPDSVKSESVSQLLVQQLDQTTFAESAVRQWEDD LHRFAAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQNVPLLTQETQEVKTTSQLFVYPAEPLFQVVQADTGESDSID LAGLADADPECVAEIAQNHGVTPFAAFNAQP >Mature_190_residues SNNRMLGNEFQTAYESAGGTDILKFLANVKQAFQCITDLTARITGMPDSVKSESVSQLLVQQLDQTTFAESAVRQWEDDL HRFAAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQNVPLLTQETQEVKTTSQLFVYPAEPLFQVVQADTGESDSIDL AGLADADPECVAEIAQNHGVTPFAAFNAQP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 20912; Mature: 20781
Theoretical pI: Translated: 3.79; Mature: 3.79
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.0 %Cys (Translated Protein) 1.6 %Met (Translated Protein) 2.6 %Cys+Met (Translated Protein) 1.1 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 2.1 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSNNRMLGNEFQTAYESAGGTDILKFLANVKQAFQCITDLTARITGMPDSVKSESVSQLL CCCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VQQLDQTTFAESAVRQWEDDLHRFAAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHC VPLLTQETQEVKTTSQLFVYPAEPLFQVVQADTGESDSIDLAGLADADPECVAEIAQNHG CCCCHHHHHHHHHHHHHEEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCC VTPFAAFNAQP CCCCCCCCCCC >Mature Secondary Structure SNNRMLGNEFQTAYESAGGTDILKFLANVKQAFQCITDLTARITGMPDSVKSESVSQLL CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH VQQLDQTTFAESAVRQWEDDLHRFAAYLTPLEPPIAILDSWDTLNDFLEANQALLSSLQN HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHC VPLLTQETQEVKTTSQLFVYPAEPLFQVVQADTGESDSIDLAGLADADPECVAEIAQNHG CCCCHHHHHHHHHHHHHEEECCHHHHHHHHCCCCCCCCEEECCCCCCCHHHHHHHHHHCC VTPFAAFNAQP CCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA