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The map label for this gene is fni

Identifier: 116494977

GI number: 116494977

Start: 1493607

End: 1494641

Strand: Direct

Name: fni

Synonym: LSEI_1493

Alternate gene names: 116494977

Gene position: 1493607-1494641 (Clockwise)

Preceding gene: 116494976

Following gene: 116494990

Centisome position: 51.59

GC content: 50.53

Gene sequence:

>1035_bases
ATGACACAAAGTCAGCAATCGCATCGCAAGGATGAACATGTTTTTCTAGCTGAAAAATACTTTCAATCTGTTGCTCATGC
GGGTTTCGATCAGGTTCGTCTTTTGCATCGAGCTTTGCCGGAAACAACCATGGCTGCGGTGGATCTAAAACCTGATCTCC
CGTTTAATTGGCAATGGCCGATTTATATCAATGCCATGACCGGCGGCTCGCCACAAACCGGCAAGTTAAACGCCCAGCTA
GGCCAGCTCGCCCAAGCTTTGGGGGTGGCGATTGCCAGCGGATCGCAATCGGTGGCATTGCGTGATCCGCAACTAGTCCC
GACTTTTGCAACGCTGCGTGATCATGATCCAAACGGGTTTATTTTAGCTAATGTTGGCGCCGGTCATCATGCGACTGCTG
CCGAGGCGGCGGTGGCAATGTTAAAAGCGAATGCACTGGAAATTCATCTCAATGCTGCTCAGGAAGTGGTCATGCCTGAG
GGCGATCGCGACTTTATGTGGCAGGCTAACATTAAGAGCATCATTGCGACTAGCCAAGTCCCTATCGTCGTAAAAGAGGT
CGGTAATGGCTTTATTCGTGAAGATCTTCAGTCCTTACAACAGCTGGGGGTTCAATTTGTTGACGTTGGCGGTCGCGGCG
GAACAAACTTTGCCACGATCGAAAATGCTCGTCGTTCGGGCCACGATTTTGCTTATTTACAAGACTGGGGACAGACAACG
GTTGAATCATTGCTTGAAGCGCGCGGACTCGGTCTAACCATGCTTGCAACTGGCGGCGTTCGTTCACCATTAGATGTTGT
GAAGGCATTGCGGCTGGGCGCTCATGCAGTCGGCATGAGTGGTATGGTGCTTCATCACTTAATTCAAACTGGCTATGAAG
CGACGCTGGCCTATTTTCAGAACTTTCTGCACCAATTGCGCCAACTTTACGCGTTATTGGGCGTCACCAATTGGCAGGAG
CTGCAAGAAGCCCCAATCGTGCTAAGTGCTGATTTGGAACATTATCGTCAGGCTCGTGGCTTACCGGGAATTTGA

Upstream 100 bases:

>100_bases
GTGGACATTTTATTAACCGCCTTGCGCCCTGTGTTCGGTGATCGGATTTTGAGCACACGCCTTGGTCCGGATGCCAGCAT
CATCACAAAGGAGCAATTTG

Downstream 100 bases:

>100_bases
CCCTAAAACAATCCAAGTCATGATTGACTTCTGGAACTTTTATTCGAAGGGAATAATGTTGCAACACAATTCTCAGTCGG
CAAATAAAAACGAACGATTT

Product: isopentenyl pyrophosphate isomerase

Products: NA

Alternate protein names: IPP isomerase; Isopentenyl pyrophosphate isomerase

Number of amino acids: Translated: 344; Mature: 343

Protein sequence:

>344_residues
MTQSQQSHRKDEHVFLAEKYFQSVAHAGFDQVRLLHRALPETTMAAVDLKPDLPFNWQWPIYINAMTGGSPQTGKLNAQL
GQLAQALGVAIASGSQSVALRDPQLVPTFATLRDHDPNGFILANVGAGHHATAAEAAVAMLKANALEIHLNAAQEVVMPE
GDRDFMWQANIKSIIATSQVPIVVKEVGNGFIREDLQSLQQLGVQFVDVGGRGGTNFATIENARRSGHDFAYLQDWGQTT
VESLLEARGLGLTMLATGGVRSPLDVVKALRLGAHAVGMSGMVLHHLIQTGYEATLAYFQNFLHQLRQLYALLGVTNWQE
LQEAPIVLSADLEHYRQARGLPGI

Sequences:

>Translated_344_residues
MTQSQQSHRKDEHVFLAEKYFQSVAHAGFDQVRLLHRALPETTMAAVDLKPDLPFNWQWPIYINAMTGGSPQTGKLNAQL
GQLAQALGVAIASGSQSVALRDPQLVPTFATLRDHDPNGFILANVGAGHHATAAEAAVAMLKANALEIHLNAAQEVVMPE
GDRDFMWQANIKSIIATSQVPIVVKEVGNGFIREDLQSLQQLGVQFVDVGGRGGTNFATIENARRSGHDFAYLQDWGQTT
VESLLEARGLGLTMLATGGVRSPLDVVKALRLGAHAVGMSGMVLHHLIQTGYEATLAYFQNFLHQLRQLYALLGVTNWQE
LQEAPIVLSADLEHYRQARGLPGI
>Mature_343_residues
TQSQQSHRKDEHVFLAEKYFQSVAHAGFDQVRLLHRALPETTMAAVDLKPDLPFNWQWPIYINAMTGGSPQTGKLNAQLG
QLAQALGVAIASGSQSVALRDPQLVPTFATLRDHDPNGFILANVGAGHHATAAEAAVAMLKANALEIHLNAAQEVVMPEG
DRDFMWQANIKSIIATSQVPIVVKEVGNGFIREDLQSLQQLGVQFVDVGGRGGTNFATIENARRSGHDFAYLQDWGQTTV
ESLLEARGLGLTMLATGGVRSPLDVVKALRLGAHAVGMSGMVLHHLIQTGYEATLAYFQNFLHQLRQLYALLGVTNWQEL
QEAPIVLSADLEHYRQARGLPGI

Specific function: Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its allylic isomer, dimethylallyl diphosphate (DMAPP)

COG id: COG1304

COG function: function code C; L-lactate dehydrogenase (FMN-dependent) and related alpha-hydroxy acid dehydrogenases

Gene ontology:

Cell location: Cytoplasm

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the IPP isomerase type 2 family

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): IDI2_LACC3 (Q038V3)

Other databases:

- EMBL:   CP000423
- RefSeq:   YP_806711.1
- ProteinModelPortal:   Q038V3
- SMR:   Q038V3
- STRING:   Q038V3
- GeneID:   4419869
- GenomeReviews:   CP000423_GR
- KEGG:   lca:LSEI_1493
- eggNOG:   COG1304
- HOGENOM:   HBG354479
- OMA:   GSQRAAI
- ProtClustDB:   PRK05437
- BioCyc:   LCAS321967:LSEI_1493-MONOMER
- GO:   GO:0005737
- HAMAP:   MF_00354
- InterPro:   IPR013785
- InterPro:   IPR000262
- InterPro:   IPR011179
- Gene3D:   G3DSA:3.20.20.70
- PANTHER:   PTHR10578:SF3
- PIRSF:   PIRSF003314
- TIGRFAMs:   TIGR02151

Pfam domain/function: PF01070 FMN_dh

EC number: =5.3.3.2

Molecular weight: Translated: 37437; Mature: 37306

Theoretical pI: Translated: 6.51; Mature: 6.51

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
2.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTQSQQSHRKDEHVFLAEKYFQSVAHAGFDQVRLLHRALPETTMAAVDLKPDLPFNWQWP
CCCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCC
IYINAMTGGSPQTGKLNAQLGQLAQALGVAIASGSQSVALRDPQLVPTFATLRDHDPNGF
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCE
ILANVGAGHHATAAEAAVAMLKANALEIHLNAAQEVVMPEGDRDFMWQANIKSIIATSQV
EEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCCCCCEEECCHHHHHHCCCC
PIVVKEVGNGFIREDLQSLQQLGVQFVDVGGRGGTNFATIENARRSGHDFAYLQDWGQTT
CEEHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
VESLLEARGLGLTMLATGGVRSPLDVVKALRLGAHAVGMSGMVLHHLIQTGYEATLAYFQ
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCHHHHCHHHHHHHHHHHHCHHHHHHHHH
NFLHQLRQLYALLGVTNWQELQEAPIVLSADLEHYRQARGLPGI
HHHHHHHHHHHHHCCCCHHHHHHCCEEEECCHHHHHHHCCCCCC
>Mature Secondary Structure 
TQSQQSHRKDEHVFLAEKYFQSVAHAGFDQVRLLHRALPETTMAAVDLKPDLPFNWQWP
CCCCHHHCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHEEEEECCCCCCCCCCCC
IYINAMTGGSPQTGKLNAQLGQLAQALGVAIASGSQSVALRDPQLVPTFATLRDHDPNGF
EEEEEECCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEECCCCCCCHHHHHHCCCCCCE
ILANVGAGHHATAAEAAVAMLKANALEIHLNAAQEVVMPEGDRDFMWQANIKSIIATSQV
EEEECCCCCCHHHHHHHHHHHHCCEEEEEECCHHHHCCCCCCCCCEEECCHHHHHHCCCC
PIVVKEVGNGFIREDLQSLQQLGVQFVDVGGRGGTNFATIENARRSGHDFAYLQDWGQTT
CEEHHHHCCCHHHHHHHHHHHCCCEEEEECCCCCCCCHHHHHHHHCCCCCHHHHHHHHHH
VESLLEARGLGLTMLATGGVRSPLDVVKALRLGAHAVGMSGMVLHHLIQTGYEATLAYFQ
HHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCHHHHCHHHHHHHHHHHHCHHHHHHHHH
NFLHQLRQLYALLGVTNWQELQEAPIVLSADLEHYRQARGLPGI
HHHHHHHHHHHHHCCCCHHHHHHCCEEEECCHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA