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The map label for this gene is ylbH [H]

Identifier: 116494806

GI number: 116494806

Start: 1303498

End: 1304064

Strand: Direct

Name: ylbH [H]

Synonym: LSEI_1317

Alternate gene names: 116494806

Gene position: 1303498-1304064 (Clockwise)

Preceding gene: 116494805

Following gene: 116494807

Centisome position: 45.02

GC content: 50.97

Gene sequence:

>567_bases
ATGCGCGTCATTAGTGGAGCATTTCGGGGATTGCGGCTGACGGCAGTGGCAGGTAACCAAACCCGGCCAACTGCAGATAA
AGTCAAGGAATCCATGTTTAACATGCTGGGACCATACTTTGACGGCGGACAGGCACTCGACTTGTATGCTGGCACCGGTG
CGTTGGGCATTGAAGCAGTCTCGCGTGGTATGGTTCACGCGACGTTGGTTGATCGGCAGTACGCCGCAATCAAAACGATC
AAAACCAATCTTGCACTAACCAAACAGCCTGAGCACTTCACCGTTTTGAAGCAACCGGTCAATAAGGCTATCCGCCAGTT
TGCGGAAGCTGGCCAACAGTTTGACTTAATCATGATGGATCCACCCTATGCGCAACAGCAAGTATTGGCACAACTTGCGG
CGTTTATCAGTACTAATTTGCTGCGGCCAGGCGCACGTGTTTTAGTTGAAACCGGTATGGATGTGACTTATCCTGATGAG
ATCCCCGGCTACATCAAGCTACGGCGCCAAACCTATGGGGTGGCGCAGGTCTTAATTTTAGAGCGAAGCGAGGAAAACAA
TGACTAA

Upstream 100 bases:

>100_bases
CAATTTAAGCCGACTGAAGAGGATCTTGAGGTGAAAGCCAAGCCAAAACGTCGCTTGCGGCCAAGTTCGGCTGGCGATGA
GACATCAGTAGGTGATCACG

Downstream 100 bases:

>100_bases
AAAAATTGCAGTGTTTCCCGGTAGTTTTGATCCTTTCACGAACGGTCATCTTGATACCGTCAAAAGAGCTAGTCGGTTGT
TTGATGAAGTGGTTGTAGCA

Product: N6-adenine-specific methylase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 188; Mature: 188

Protein sequence:

>188_residues
MRVISGAFRGLRLTAVAGNQTRPTADKVKESMFNMLGPYFDGGQALDLYAGTGALGIEAVSRGMVHATLVDRQYAAIKTI
KTNLALTKQPEHFTVLKQPVNKAIRQFAEAGQQFDLIMMDPPYAQQQVLAQLAAFISTNLLRPGARVLVETGMDVTYPDE
IPGYIKLRRQTYGVAQVLILERSEENND

Sequences:

>Translated_188_residues
MRVISGAFRGLRLTAVAGNQTRPTADKVKESMFNMLGPYFDGGQALDLYAGTGALGIEAVSRGMVHATLVDRQYAAIKTI
KTNLALTKQPEHFTVLKQPVNKAIRQFAEAGQQFDLIMMDPPYAQQQVLAQLAAFISTNLLRPGARVLVETGMDVTYPDE
IPGYIKLRRQTYGVAQVLILERSEENND
>Mature_188_residues
MRVISGAFRGLRLTAVAGNQTRPTADKVKESMFNMLGPYFDGGQALDLYAGTGALGIEAVSRGMVHATLVDRQYAAIKTI
KTNLALTKQPEHFTVLKQPVNKAIRQFAEAGQQFDLIMMDPPYAQQQVLAQLAAFISTNLLRPGARVLVETGMDVTYPDE
IPGYIKLRRQTYGVAQVLILERSEENND

Specific function: May catalyze the S-adenosyl-L-methionine-dependent methylation of a specific base in rRNA (Potential) [H]

COG id: COG0742

COG function: function code L; N6-adenine-specific methylase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the methyltransferase superfamily. RsmD family [H]

Homologues:

Organism=Escherichia coli, GI1789875, Length=170, Percent_Identity=30.5882352941176, Blast_Score=84, Evalue=4e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004398 [H]

Pfam domain/function: PF03602 Cons_hypoth95 [H]

EC number: 2.1.1.- [C]

Molecular weight: Translated: 20715; Mature: 20715

Theoretical pI: Translated: 9.28; Mature: 9.28

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVISGAFRGLRLTAVAGNQTRPTADKVKESMFNMLGPYFDGGQALDLYAGTGALGIEAV
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHH
SRGMVHATLVDRQYAAIKTIKTNLALTKQPEHFTVLKQPVNKAIRQFAEAGQQFDLIMMD
HCCCEEEHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PPYAQQQVLAQLAAFISTNLLRPGARVLVETGMDVTYPDEIPGYIKLRRQTYGVAQVLIL
CCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCEEEHHHHHCHHEEEEE
ERSEENND
ECCCCCCC
>Mature Secondary Structure
MRVISGAFRGLRLTAVAGNQTRPTADKVKESMFNMLGPYFDGGQALDLYAGTGALGIEAV
CCCCCCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHHHH
SRGMVHATLVDRQYAAIKTIKTNLALTKQPEHFTVLKQPVNKAIRQFAEAGQQFDLIMMD
HCCCEEEHHHHHHHHHHHHHHHCEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEC
PPYAQQQVLAQLAAFISTNLLRPGARVLVETGMDVTYPDEIPGYIKLRRQTYGVAQVLIL
CCCHHHHHHHHHHHHHHHHCCCCCHHEEEECCCCCCCCCCCCCCEEEHHHHHCHHEEEEE
ERSEENND
ECCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Methyltransferases Protein + DNA = Protein-DNA [C]

General reaction: Transferring one-carbon groups [C]

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]