Click here to switch to the map view.

The map label for this gene is radC [C]

Identifier: 116494746

GI number: 116494746

Start: 1234044

End: 1234712

Strand: Direct

Name: radC [C]

Synonym: LSEI_1254

Alternate gene names: 116494746

Gene position: 1234044-1234712 (Clockwise)

Preceding gene: 116494745

Following gene: 116494747

Centisome position: 42.62

GC content: 49.03

Gene sequence:

>669_bases
ATGGCAAATGCAGCAGAATTGCCACGTGAACGGTTATTAGCACATGGTCCGCAGGCTTTGACGGATGCTGAGCTTTTGCA
GCTGGTGGTGCGAGCAGGGAATCAACATTATCCGGTTAAGCAGATCGTGAGTGAAGTTTTGGCGACTTATCCGAAACTTC
AGGGCTTGGCAGAGGGGGATCAAGGGTTGCTTGAGCATATTCGGGGACTGGGCGCTGCCAAACGGGCTAGTATTTTAGCT
GGGGTGGAGTTGGGGCGGCGGGCTATGCAACGGCAGACGGTTCGCTACGGGCAAATCAAAAATAGCGAACAGTTAGGCAA
AACGATGATTTCTCGGTTTGCTGGTGTGAATCAGGAATCCATGTTGATTTTATTTTTAGATGTTAAGAATCAGATTATTA
CTGAACAGATTGCTGCAATTGGTACAGTAGATTCAGCTATGGCAGATCCGCGTATTGTTTTTAGAGAAGCGTTAAAGTTG
AGCGCCACAAACCTGATTATGGTACACAATCATCCCAGTGGTGATCCCTCGCCAAGTCAGGCGGATCGGGACACCACGAC
TCGGTTTCAGTTGGCCGCCGCGTTGCTTGGCATGCATTTGATTGACCATCTCATTGTTGGTGGGGAACGCTATTATTCAT
TCGCGCGCGATGATCCGGAGTTCAATTAG

Upstream 100 bases:

>100_bases
TTACCAGCTTGGTTGAAAAATCAGCCTGCGTTTGCGTAATTTTCTAATGACACCGATAACTGATCGGTGAAGTGAGAAAA
TGCCAACAGGGGGAATTTTC

Downstream 100 bases:

>100_bases
GCAGGGGAACAAAGTTGTAAGCTTTTCTCAAATTGCCCATCTGGCATGAAAATCGGGTAGTTTCACATTTTGTCACAGAA
ATAAATATGCTATAATGCAT

Product: DNA repair protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 222; Mature: 221

Protein sequence:

>222_residues
MANAAELPRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHIRGLGAAKRASILA
GVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLDVKNQIITEQIAAIGTVDSAMADPRIVFREALKL
SATNLIMVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLIDHLIVGGERYYSFARDDPEFN

Sequences:

>Translated_222_residues
MANAAELPRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHIRGLGAAKRASILA
GVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLDVKNQIITEQIAAIGTVDSAMADPRIVFREALKL
SATNLIMVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLIDHLIVGGERYYSFARDDPEFN
>Mature_221_residues
ANAAELPRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGDQGLLEHIRGLGAAKRASILAG
VELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQESMLILFLDVKNQIITEQIAAIGTVDSAMADPRIVFREALKLS
ATNLIMVHNHPSGDPSPSQADRDTTTRFQLAAALLGMHLIDHLIVGGERYYSFARDDPEFN

Specific function: Involved In DNA Repair. [C]

COG id: COG2003

COG function: function code L; DNA repair proteins

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0758 family [H]

Homologues:

Organism=Escherichia coli, GI87082300, Length=217, Percent_Identity=33.1797235023041, Blast_Score=129, Evalue=1e-31,
Organism=Escherichia coli, GI1788997, Length=104, Percent_Identity=42.3076923076923, Blast_Score=94, Evalue=7e-21,
Organism=Escherichia coli, GI2367100, Length=102, Percent_Identity=41.1764705882353, Blast_Score=89, Evalue=2e-19,
Organism=Escherichia coli, GI1788312, Length=109, Percent_Identity=38.5321100917431, Blast_Score=87, Evalue=1e-18,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010994
- InterPro:   IPR001405
- InterPro:   IPR020891 [H]

Pfam domain/function: PF04002 DUF2466 [H]

EC number: NA

Molecular weight: Translated: 24360; Mature: 24229

Theoretical pI: Translated: 7.26; Mature: 7.26

Prosite motif: PS01302 RADC

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.2 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANAAELPRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGD
CCCHHHCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
QGLLEHIRGLGAAKRASILAGVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQES
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
MLILFLDVKNQIITEQIAAIGTVDSAMADPRIVFREALKLSATNLIMVHNHPSGDPSPSQ
EEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC
ADRDTTTRFQLAAALLGMHLIDHLIVGGERYYSFARDDPEFN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC
>Mature Secondary Structure 
ANAAELPRERLLAHGPQALTDAELLQLVVRAGNQHYPVKQIVSEVLATYPKLQGLAEGD
CCHHHCCHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCC
QGLLEHIRGLGAAKRASILAGVELGRRAMQRQTVRYGQIKNSEQLGKTMISRFAGVNQES
HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCC
MLILFLDVKNQIITEQIAAIGTVDSAMADPRIVFREALKLSATNLIMVHNHPSGDPSPSQ
EEEEEECCHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHCCEEEEECCCCCCCCCCC
ADRDTTTRFQLAAALLGMHLIDHLIVGGERYYSFARDDPEFN
CCCHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA