Click here to switch to the map view.

The map label for this gene is ybbR [H]

Identifier: 116494521

GI number: 116494521

Start: 1002501

End: 1003586

Strand: Direct

Name: ybbR [H]

Synonym: LSEI_1017

Alternate gene names: 116494521

Gene position: 1002501-1003586 (Clockwise)

Preceding gene: 116494520

Following gene: 116494522

Centisome position: 34.63

GC content: 46.5

Gene sequence:

>1086_bases
ATGAATCGCTTATGGGATAATCCATGGGTTAATCGGTTGTTGGCTCTGCTTCTCGCGATTGGGCTTTTTGCTTATGTCAA
CGTTGAAAGCATCAACAATACCAGACAAAGTGCAAATGATGATACAATCTTGGTTGCCAACAAAACCCAGACCGTGAAAG
TGCCGTTACAGGTAAATGCCAACACGGACAAGTATTTTATTACCGGTTATCCGTCAAAAGTTTCAGTTGCATTGACAGGA
ACGGCTTCATTAGTCACGATGACCGCCAACACCCAAAATTTTCGGATCATTGCTGATCTTACCAAACTCGGTGTTGGCAA
GCATCGTGTTCGGTTGAAGGCAGAAGGTTTGAATAAGGATTTGAGTTATTCGATTTCGCCTAAATCCGTGACCGTTGACA
TTCAGGTTCGGGACAATAAGACGATGCCGATTCAGGTTCGCTATAATAAAGCCAGTATCGCATCCGGGTATGCAGCTGGT
GAGCCAAAGCTGTCGACGCGAACAGTGGATGTCACTGGCGCACGATCCGTGATTGACTCGATCGCACAAGTTGTGGCAAA
TGTCTCGCTGTCGCACAATACCCGGAGTACGGTTGACCAAGAGGTGCTGTTACAGGCGCTTGATGAGAACGGCAATACGA
TGAATGTTGTGTTGGCACCGCAGACTGTTCATGTAACCTTACCGATTTCTCAACCTAGCAAGAAACTTACCGTGGAGCTA
AAACAAACTGGTACTGCCGTGTCAGGACGCACGTATGTCTTGTCCTCTGACACAAAACAGGTTACCGTATACGGAGACCA
AAGTAGTTTGGACAAGCTGAGTAAATTAACCGTGGACGTCGATGTCAGCGGTATTAGCACGACGACAACTCGGACTTACA
ACGTAACTGATTTGAATGATGGCATTTCTGCTGCTAGTCCGAAATCACTTAAAGTGACGGTTAGTGTTGGCAACACTGGT
AATGATGATAATAACAACAATGGCGGTTCAACAGCGAGCGCCAGTACTTCGAGTTCGAGTGCCGCAAGCACCTCGAGTGC
CAGTGAATCAGACTCAAGTACATCAACAAGCGACAATAATGGCTGA

Upstream 100 bases:

>100_bases
CGGCGCAGTTAGTGCCAAAAGAAGAGGCGCCGAATCCGAACCCAGTTGTCAGTTTCTTTTCGCGCCGGTTTAAGTCACGT
AAAAAGAAGGAGGGCAAGCA

Downstream 100 bases:

>100_bases
AAGAAATGAGGAAGAATTAAGATGACAAAGTATTTTGGTACTGATGGCGTTCGTGGCATTGCAAACAAGGAACTAAGTCC
GGAAATGGCTTTCCGGCTAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 361

Protein sequence:

>361_residues
MNRLWDNPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTILVANKTQTVKVPLQVNANTDKYFITGYPSKVSVALTG
TASLVTMTANTQNFRIIADLTKLGVGKHRVRLKAEGLNKDLSYSISPKSVTVDIQVRDNKTMPIQVRYNKASIASGYAAG
EPKLSTRTVDVTGARSVIDSIAQVVANVSLSHNTRSTVDQEVLLQALDENGNTMNVVLAPQTVHVTLPISQPSKKLTVEL
KQTGTAVSGRTYVLSSDTKQVTVYGDQSSLDKLSKLTVDVDVSGISTTTTRTYNVTDLNDGISAASPKSLKVTVSVGNTG
NDDNNNNGGSTASASTSSSSAASTSSASESDSSTSTSDNNG

Sequences:

>Translated_361_residues
MNRLWDNPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTILVANKTQTVKVPLQVNANTDKYFITGYPSKVSVALTG
TASLVTMTANTQNFRIIADLTKLGVGKHRVRLKAEGLNKDLSYSISPKSVTVDIQVRDNKTMPIQVRYNKASIASGYAAG
EPKLSTRTVDVTGARSVIDSIAQVVANVSLSHNTRSTVDQEVLLQALDENGNTMNVVLAPQTVHVTLPISQPSKKLTVEL
KQTGTAVSGRTYVLSSDTKQVTVYGDQSSLDKLSKLTVDVDVSGISTTTTRTYNVTDLNDGISAASPKSLKVTVSVGNTG
NDDNNNNGGSTASASTSSSSAASTSSASESDSSTSTSDNNG
>Mature_361_residues
MNRLWDNPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTILVANKTQTVKVPLQVNANTDKYFITGYPSKVSVALTG
TASLVTMTANTQNFRIIADLTKLGVGKHRVRLKAEGLNKDLSYSISPKSVTVDIQVRDNKTMPIQVRYNKASIASGYAAG
EPKLSTRTVDVTGARSVIDSIAQVVANVSLSHNTRSTVDQEVLLQALDENGNTMNVVLAPQTVHVTLPISQPSKKLTVEL
KQTGTAVSGRTYVLSSDTKQVTVYGDQSSLDKLSKLTVDVDVSGISTTTTRTYNVTDLNDGISAASPKSLKVTVSVGNTG
NDDNNNNGGSTASASTSSSSAASTSSASESDSSTSTSDNNG

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 38211; Mature: 38211

Theoretical pI: Translated: 9.37; Mature: 9.37

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.1 %Met     (Translated Protein)
1.1 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.1 %Met     (Mature Protein)
1.1 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNRLWDNPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTILVANKTQTVKVPLQVNA
CCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCCEEEEEEEEECC
NTDKYFITGYPSKVSVALTGTASLVTMTANTQNFRIIADLTKLGVGKHRVRLKAEGLNKD
CCCEEEEEECCCEEEEEEECCEEEEEEEECCCCEEEEEEHHHCCCCCEEEEEEECCCCCC
LSYSISPKSVTVDIQVRDNKTMPIQVRYNKASIASGYAAGEPKLSTRTVDVTGARSVIDS
CEEEECCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHH
IAQVVANVSLSHNTRSTVDQEVLLQALDENGNTMNVVLAPQTVHVTLPISQPSKKLTVEL
HHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEE
KQTGTAVSGRTYVLSSDTKQVTVYGDQSSLDKLSKLTVDVDVSGISTTTTRTYNVTDLND
ECCCCEECCEEEEEECCCEEEEEEECCHHHHHHHEEEEEEEECCCEEEEEEEEEEEECCC
GISAASPKSLKVTVSVGNTGNDDNNNNGGSTASASTSSSSAASTSSASESDSSTSTSDNN
CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
G
C
>Mature Secondary Structure
MNRLWDNPWVNRLLALLLAIGLFAYVNVESINNTRQSANDDTILVANKTQTVKVPLQVNA
CCCCCCCHHHHHHHHHHHHHHHHHEEEEECCCCCCCCCCCCEEEEECCCEEEEEEEEECC
NTDKYFITGYPSKVSVALTGTASLVTMTANTQNFRIIADLTKLGVGKHRVRLKAEGLNKD
CCCEEEEEECCCEEEEEEECCEEEEEEEECCCCEEEEEEHHHCCCCCEEEEEEECCCCCC
LSYSISPKSVTVDIQVRDNKTMPIQVRYNKASIASGYAAGEPKLSTRTVDVTGARSVIDS
CEEEECCCEEEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEEECCHHHHHHH
IAQVVANVSLSHNTRSTVDQEVLLQALDENGNTMNVVLAPQTVHVTLPISQPSKKLTVEL
HHHHHHCCEECCCCHHHHHHHHHHHHHCCCCCEEEEEECCCEEEEEEECCCCCCEEEEEE
KQTGTAVSGRTYVLSSDTKQVTVYGDQSSLDKLSKLTVDVDVSGISTTTTRTYNVTDLND
ECCCCEECCEEEEEECCCEEEEEEECCHHHHHHHEEEEEEEECCCEEEEEEEEEEEECCC
GISAASPKSLKVTVSVGNTGNDDNNNNGGSTASASTSSSSAASTSSASESDSSTSTSDNN
CCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
G
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]