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The map label for this gene is ydeP [H]

Identifier: 116494008

GI number: 116494008

Start: 449975

End: 450319

Strand: Direct

Name: ydeP [H]

Synonym: LSEI_0445

Alternate gene names: 116494008

Gene position: 449975-450319 (Clockwise)

Preceding gene: 116494006

Following gene: 116494015

Centisome position: 15.54

GC content: 47.25

Gene sequence:

>345_bases
ATGTCACGAGAAATTTACGATTGTGCTGCAGGCTGTCCCGTCCAAAATACGGTTGACGTGATTGCCGGTAAATGGAAGAG
CGTCATTCTCTATCATCTTTTTCAAGGCGATGCGACTCGGTTCAGTACACTCAACAAAGCCATTCCATCTATTACCGAGC
GCATGCTGGCATTACAGTTGGCGCAACTCGAGGCCGATAATATTATTGTCAAGAAAGCTGGTTATGCAGACGGACGGGCT
ACAGAATACCAATTAACCGCACTAGGCCAGACCCTAGCACCTGTCATTCAGGCTATGGCAGCTTGGGGTGAAGCATATAA
AGTGCGGCGAAAAGCATTAGTTTAA

Upstream 100 bases:

>100_bases
CTGGAAGGCACTATCATAGTAAGTGAACAAATTGTAAGTGAAAACGATGTGGAAGTCAGCTTCTGCATCAGCAAATGTGT
TTTTAAGGGAAGTCCTATTG

Downstream 100 bases:

>100_bases
TTAAGAATAGTCTTTATGACGGCAAAAACGGCTCTACGCCAACTGGTGTTGAAGAATAAATTTATCATTTGAGGCGGTTC
TCCATTTGGGGAGCCGTCTT

Product: transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MSREIYDCAAGCPVQNTVDVIAGKWKSVILYHLFQGDATRFSTLNKAIPSITERMLALQLAQLEADNIIVKKAGYADGRA
TEYQLTALGQTLAPVIQAMAAWGEAYKVRRKALV

Sequences:

>Translated_114_residues
MSREIYDCAAGCPVQNTVDVIAGKWKSVILYHLFQGDATRFSTLNKAIPSITERMLALQLAQLEADNIIVKKAGYADGRA
TEYQLTALGQTLAPVIQAMAAWGEAYKVRRKALV
>Mature_113_residues
SREIYDCAAGCPVQNTVDVIAGKWKSVILYHLFQGDATRFSTLNKAIPSITERMLALQLAQLEADNIIVKKAGYADGRAT
EYQLTALGQTLAPVIQAMAAWGEAYKVRRKALV

Specific function: Unknown

COG id: COG1733

COG function: function code K; Predicted transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH hxlR-type DNA-binding domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002577
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01638 DUF24 [H]

EC number: NA

Molecular weight: Translated: 12502; Mature: 12370

Theoretical pI: Translated: 9.12; Mature: 9.12

Prosite motif: PS51118 HTH_HXLR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.8 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
1.8 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSREIYDCAAGCPVQNTVDVIAGKWKSVILYHLFQGDATRFSTLNKAIPSITERMLALQL
CCCCHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AQLEADNIIVKKAGYADGRATEYQLTALGQTLAPVIQAMAAWGEAYKVRRKALV
HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure 
SREIYDCAAGCPVQNTVDVIAGKWKSVILYHLFQGDATRFSTLNKAIPSITERMLALQL
CCCHHHHHCCCCCCHHHHHHHCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
AQLEADNIIVKKAGYADGRATEYQLTALGQTLAPVIQAMAAWGEAYKVRRKALV
HHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]