Click here to switch to the map view.

The map label for this gene is yceJ [H]

Identifier: 116493993

GI number: 116493993

Start: 432968

End: 434131

Strand: Direct

Name: yceJ [H]

Synonym: LSEI_0429

Alternate gene names: 116493993

Gene position: 432968-434131 (Clockwise)

Preceding gene: 116493992

Following gene: 116493994

Centisome position: 14.95

GC content: 48.54

Gene sequence:

>1164_bases
ATGAAAGAACGTAGACTTTCGTTTCTATTCTTCTTAGTGATGTTTGTGATTGGCACCGATACCTTTTTGGTTTCACCGTT
GTTACCGACGTTGACGCAATACTATGGCATTTCGACTAGTCTATCTGGTTTTATTGTCAGCGCTTATGCAGTGGGCTACA
TGATATCGGCATTATTGATTGGTCCGATTTCTGACCGGCACGATCGCAAACGTATTTTGGTCATCGGGTTAGTGGTTTTC
ACGTTGGCGACTGCCGGGTGCGGACTGGCGAATACGTTTGCGATGATGCTTGTCGCCAGATTCGTCGCTGGTGTCGCGGC
GGCCACGGCCGGACCGCAAATCTGGGCGGCTATCCCGGTATTGTTTCCAAAGACGCAAGTTGTCAAAGTAATGGGATATG
CCACGGCCGGTCTGGCGGTTGCTCAAATCGTTGGGGTACCATTGGGGAGTTACTTAGCGGTATGGTCATGGCGATTTCCG
TTCTTCTTCGTTGGCGTCATTGCCTTGATGTTGACGATGTTGGTCGTGCGTTTCATGCCCAGTCTTAACGAGGTGACAAC
TTCACGTCTTGCAACTGGTATCTATCGCAAACTTTTTCAGAACAAAACCGTGCTTAAACTGCTAGGGGCATACTTATTGT
TTCAAACTGCAAATTTTTGCGGTTTCGCCTTTATCGGCACTTGGTTTGCGAAAAGCTTCCATTTATCAGTTGGTGCCATT
GGCAGCTTCATTCTTTTAATCGGCGTTGGTCAGTTTGTTGGCAGTTTGCTGGGCAACCGATTAGTCACTTGGTTGGGTCA
GCCGCATGCGTTTCTGCTTGAGTTCTTACTTTTCATTGCTGGGTATCTGGTTTTGCCTTTCACCAATTCGCCACTGACGG
CAACGGTCATTCTGGCGTTTATCTATACAATCGGTGGCGCACTGCTGCCATTGTTTATGAGTACCTTGCAAGAACACGCG
GGATCAGCCCGCAGCACGATTTCCGCGTTGGCCAATGCCGTCATGTACTTAGGTGAGGCCATCGGTGGTGTCATCGGCGG
TATCTTGATTAAACAGTTTACTGGCTTCTCGGGGATTGCCGTTTTTACAGCGATTGGCGCAAGCTTGGCGATGTTGTTAT
ATGCCCAGCAGGGATATTTTAAGCAATTGCAGACGAGTCGTTAA

Upstream 100 bases:

>100_bases
GGGTTTACTTGAGAAGCTATAAATAAGCACATGGTTGCTTATTTTTTAGCACTGATTGTTTGATAACTTTAAAACCGTAA
AACTGATTGGAGACTTTCTG

Downstream 100 bases:

>100_bases
ACACATACAGTACGGCTCAATGAAGCTAGTACTGGAAGGCTAAATTTTTTTGCTAATTCAGTTATGTGGCCGCCCCACAG
CATCCAAGCTATTTACAACG

Product: major facilitator superfamily permease

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 387; Mature: 387

Protein sequence:

>387_residues
MKERRLSFLFFLVMFVIGTDTFLVSPLLPTLTQYYGISTSLSGFIVSAYAVGYMISALLIGPISDRHDRKRILVIGLVVF
TLATAGCGLANTFAMMLVARFVAGVAAATAGPQIWAAIPVLFPKTQVVKVMGYATAGLAVAQIVGVPLGSYLAVWSWRFP
FFFVGVIALMLTMLVVRFMPSLNEVTTSRLATGIYRKLFQNKTVLKLLGAYLLFQTANFCGFAFIGTWFAKSFHLSVGAI
GSFILLIGVGQFVGSLLGNRLVTWLGQPHAFLLEFLLFIAGYLVLPFTNSPLTATVILAFIYTIGGALLPLFMSTLQEHA
GSARSTISALANAVMYLGEAIGGVIGGILIKQFTGFSGIAVFTAIGASLAMLLYAQQGYFKQLQTSR

Sequences:

>Translated_387_residues
MKERRLSFLFFLVMFVIGTDTFLVSPLLPTLTQYYGISTSLSGFIVSAYAVGYMISALLIGPISDRHDRKRILVIGLVVF
TLATAGCGLANTFAMMLVARFVAGVAAATAGPQIWAAIPVLFPKTQVVKVMGYATAGLAVAQIVGVPLGSYLAVWSWRFP
FFFVGVIALMLTMLVVRFMPSLNEVTTSRLATGIYRKLFQNKTVLKLLGAYLLFQTANFCGFAFIGTWFAKSFHLSVGAI
GSFILLIGVGQFVGSLLGNRLVTWLGQPHAFLLEFLLFIAGYLVLPFTNSPLTATVILAFIYTIGGALLPLFMSTLQEHA
GSARSTISALANAVMYLGEAIGGVIGGILIKQFTGFSGIAVFTAIGASLAMLLYAQQGYFKQLQTSR
>Mature_387_residues
MKERRLSFLFFLVMFVIGTDTFLVSPLLPTLTQYYGISTSLSGFIVSAYAVGYMISALLIGPISDRHDRKRILVIGLVVF
TLATAGCGLANTFAMMLVARFVAGVAAATAGPQIWAAIPVLFPKTQVVKVMGYATAGLAVAQIVGVPLGSYLAVWSWRFP
FFFVGVIALMLTMLVVRFMPSLNEVTTSRLATGIYRKLFQNKTVLKLLGAYLLFQTANFCGFAFIGTWFAKSFHLSVGAI
GSFILLIGVGQFVGSLLGNRLVTWLGQPHAFLLEFLLFIAGYLVLPFTNSPLTATVILAFIYTIGGALLPLFMSTLQEHA
GSARSTISALANAVMYLGEAIGGVIGGILIKQFTGFSGIAVFTAIGASLAMLLYAQQGYFKQLQTSR

Specific function: May Be Involved In Either The Transport Or Processing Of Arabinose Polymers. [C]

COG id: COG2814

COG function: function code G; Arabinose efflux permease

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the major facilitator superfamily [H]

Homologues:

Organism=Escherichia coli, GI1786595, Length=387, Percent_Identity=25.8397932816537, Blast_Score=75, Evalue=9e-15,
Organism=Escherichia coli, GI1788509, Length=265, Percent_Identity=26.0377358490566, Blast_Score=72, Evalue=6e-14,
Organism=Escherichia coli, GI87082231, Length=168, Percent_Identity=25, Blast_Score=64, Evalue=1e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020846
- InterPro:   IPR011701
- InterPro:   IPR016196
- InterPro:   IPR001958 [H]

Pfam domain/function: PF07690 MFS_1 [H]

EC number: NA

Molecular weight: Translated: 41640; Mature: 41640

Theoretical pI: Translated: 10.44; Mature: 10.44

Prosite motif: PS50850 MFS

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.5 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
3.6 %Cys+Met (Translated Protein)
0.5 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure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HHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: 9274031; 9384377 [H]