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The map label for this gene is yhcJ [H]

Identifier: 116493975

GI number: 116493975

Start: 417812

End: 418678

Strand: Direct

Name: yhcJ [H]

Synonym: LSEI_0411

Alternate gene names: 116493975

Gene position: 417812-418678 (Clockwise)

Preceding gene: 116493973

Following gene: 116493976

Centisome position: 14.43

GC content: 41.98

Gene sequence:

>867_bases
ATGAGTCGTTGGAAAAAAGCTATCTTCACAGGGATTGCATTGGTTTCATTATTAACACTAACAGCATGTGGCAAAGCAGC
TAGTAGCAATAGCAGTCATACTGGTTCAAAAAGTGAGTCAATCATCATCGGCAGTAGTGGCTCGGATTATCAAATTTGGC
AACATATTGCTAAATCACCGCAGGCCAAGAAGGCTGGTCTGAGGATTAAAGTCAAGCAAGTTTCAGATGGCAACGTCACT
AACTCAGCTACTGCCGAGGGACAATTGGATGTTAATGCATTCCAGTCATATGCTTACTTTCAGCAATATAACAAATTAAA
TCCGAGCGAAAAGTTAGCAGCATTAGGCACAACCTACCTGGAACCAATGGGACTGTATTCTAAAAAATATAAACAGCTGC
GAGAGATTCCAGATGGTGCAACGATTGGCATCTCAAACGATCCTGCTAATGCGACACGAGGGTTACTTTTGCTAGCAACG
GCCAAGCTTGTCACCCTTAAGTCTGACTTCAATGCTTTAAGTACCGTGAAGGACATTCAAGCCAATCCGAAGCACTTAAA
GTTTAAAGAGGTCGACCCATCGGTGCAAATGCTGCCCGATTTGGACGCAGAACTGATTTCGAATACGCGGGCACTTGATG
GTGGGCTGAATGTTTTGAAAGATTCATTGGTGCATGAGAAGTTGAACCAAACGACGCGCGCCAACGTCAATATATTAGTG
ACTGCAGTGAAAAATGAAAAAAAGGAAGAATTTAAAAAGTTAGTGCCGCTTTACCATGACCCAACGATTCAGAGTTGGAT
TAAAAAGACTTTTTCTGGCACGAAACTTGATGTGAATAAACCGATCAGTTATCTCCAACAAAAATAA

Upstream 100 bases:

>100_bases
TTTTTTTGTGGCAGCGCAAGGTTATCTAAAATAAATCAAAGTTGTTTAACGAGATGGTCTTGATAGTTTGCTGGTGGAAA
TGTTTGGAGGAGGATCTCTT

Downstream 100 bases:

>100_bases
TAATAATGAGATCGCTGTGAAACCAGTACTTATGGGGCTGTAGAGCAGCTTTTTGTTGAAGGGGATCGAGCCATTAAGCA
TTTCGGGTTATAATGACAGT

Product: ABC-type metal ion transport system, periplasmic component/surface antigen

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 288; Mature: 287

Protein sequence:

>288_residues
MSRWKKAIFTGIALVSLLTLTACGKAASSNSSHTGSKSESIIIGSSGSDYQIWQHIAKSPQAKKAGLRIKVKQVSDGNVT
NSATAEGQLDVNAFQSYAYFQQYNKLNPSEKLAALGTTYLEPMGLYSKKYKQLREIPDGATIGISNDPANATRGLLLLAT
AKLVTLKSDFNALSTVKDIQANPKHLKFKEVDPSVQMLPDLDAELISNTRALDGGLNVLKDSLVHEKLNQTTRANVNILV
TAVKNEKKEEFKKLVPLYHDPTIQSWIKKTFSGTKLDVNKPISYLQQK

Sequences:

>Translated_288_residues
MSRWKKAIFTGIALVSLLTLTACGKAASSNSSHTGSKSESIIIGSSGSDYQIWQHIAKSPQAKKAGLRIKVKQVSDGNVT
NSATAEGQLDVNAFQSYAYFQQYNKLNPSEKLAALGTTYLEPMGLYSKKYKQLREIPDGATIGISNDPANATRGLLLLAT
AKLVTLKSDFNALSTVKDIQANPKHLKFKEVDPSVQMLPDLDAELISNTRALDGGLNVLKDSLVHEKLNQTTRANVNILV
TAVKNEKKEEFKKLVPLYHDPTIQSWIKKTFSGTKLDVNKPISYLQQK
>Mature_287_residues
SRWKKAIFTGIALVSLLTLTACGKAASSNSSHTGSKSESIIIGSSGSDYQIWQHIAKSPQAKKAGLRIKVKQVSDGNVTN
SATAEGQLDVNAFQSYAYFQQYNKLNPSEKLAALGTTYLEPMGLYSKKYKQLREIPDGATIGISNDPANATRGLLLLATA
KLVTLKSDFNALSTVKDIQANPKHLKFKEVDPSVQMLPDLDAELISNTRALDGGLNVLKDSLVHEKLNQTTRANVNILVT
AVKNEKKEEFKKLVPLYHDPTIQSWIKKTFSGTKLDVNKPISYLQQK

Specific function: Unknown

COG id: COG1464

COG function: function code P; ABC-type metal ion transport system, periplasmic component/surface antigen

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the nlpA lipoprotein family [H]

Homologues:

Organism=Escherichia coli, GI1790093, Length=247, Percent_Identity=34.8178137651822, Blast_Score=129, Evalue=3e-31,
Organism=Escherichia coli, GI1786396, Length=266, Percent_Identity=33.0827067669173, Blast_Score=118, Evalue=4e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004872 [H]

Pfam domain/function: PF03180 Lipoprotein_9 [H]

EC number: NA

Molecular weight: Translated: 31565; Mature: 31434

Theoretical pI: Translated: 10.18; Mature: 10.18

Prosite motif: PS00013 PROKAR_LIPOPROTEIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.0 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSRWKKAIFTGIALVSLLTLTACGKAASSNSSHTGSKSESIIIGSSGSDYQIWQHIAKSP
CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC
QAKKAGLRIKVKQVSDGNVTNSATAEGQLDVNAFQSYAYFQQYNKLNPSEKLAALGTTYL
CCHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EPMGLYSKKYKQLREIPDGATIGISNDPANATRGLLLLATAKLVTLKSDFNALSTVKDIQ
HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCEEEHHHHEEECCCHHHHHHHHHHC
ANPKHLKFKEVDPSVQMLPDLDAELISNTRALDGGLNVLKDSLVHEKLNQTTRANVNILV
CCCCCEEEECCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TAVKNEKKEEFKKLVPLYHDPTIQSWIKKTFSGTKLDVNKPISYLQQK
EECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHCC
>Mature Secondary Structure 
SRWKKAIFTGIALVSLLTLTACGKAASSNSSHTGSKSESIIIGSSGSDYQIWQHIAKSP
CHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHCCC
QAKKAGLRIKVKQVSDGNVTNSATAEGQLDVNAFQSYAYFQQYNKLNPSEKLAALGTTYL
CCHHCCCEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
EPMGLYSKKYKQLREIPDGATIGISNDPANATRGLLLLATAKLVTLKSDFNALSTVKDIQ
HHHHHHHHHHHHHHHCCCCCEEECCCCCCHHHHCCCEEEHHHHEEECCCHHHHHHHHHHC
ANPKHLKFKEVDPSVQMLPDLDAELISNTRALDGGLNVLKDSLVHEKLNQTTRANVNILV
CCCCCEEEECCCCCHHHCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEE
TAVKNEKKEEFKKLVPLYHDPTIQSWIKKTFSGTKLDVNKPISYLQQK
EECCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCEEECCCCHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8969498; 9384377 [H]