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The map label for this gene is ygbT [H]

Identifier: 116493922

GI number: 116493922

Start: 355004

End: 355951

Strand: Direct

Name: ygbT [H]

Synonym: LSEI_0355

Alternate gene names: 116493922

Gene position: 355004-355951 (Clockwise)

Preceding gene: 116493921

Following gene: 116493923

Centisome position: 12.26

GC content: 57.28

Gene sequence:

>948_bases
ATGGAGTCGGGCGCAAAAAAGGCAGATCTGACCGAGCTCAGCCGGGTACGCGAGCGGGTGACTTTTCTGTATCTTGAGCA
CGCCAAAATTAACCGCCAGGATAGTGCCATCGTTGTCATCGATACGGGAGGCACCGTGGCGATCCCCGCCGCCCTGATCA
GTGTGCTCATGCTGGGTCCCGGCGTTGACGTGACCCATCGGGCCATGGAGTTGATGGGAGACGCGGGAATGAGTGTGGTG
TGGGTCGGTGAGCGCGGCGTCAGACAGTACGCCCCCGGTCGCGCGCTGACTCATTCGTCGGCGTTGCTTGTCGCGCAGGC
CAAGCTGGTGTCGAATAATCGGCTGCGGGTCGGGGTGGCACGGCAGATGTACCAGATGCGCTTTCCTGACGATGATGTGT
CCACACTTTCGATGCAAGAACTTAGGGGAAAAGAGGGGGCGCGAGTCCGCCGGATCTATCGCGAAGAGTCCCGGCGAACG
GGCGTTGAGTGGACCCACCGGGAGTATGATCCAGAAAATTATCAAAGTGGTTCGATCATCAATCAGGCGTTGACGGCGGC
GCACGCTGCCCTGTATGGGTTGAGCTACAGCGTCATCGTTGCGCTGGGGGCGTCGCCCGGACTGGGGTTTGTCCATACGG
GCCATGACTTGTCATTTGTGTATGATTTTGCCGATCTCTATAAGGCAGAAGTCACGATCCCAATCGCGTTCACCGTTGCG
GCGAACGCAACGGAGCAAGATGACATTGGTCAACTGACGCGACTTGCAGTCAGAGATGCTTTTGTTGATGGCAAGTTGAT
GATCCGCATGGTGGCGGATCTGAAAATGTTACTCGGTGACGTGGACGATGATTTGGACGCGGACGTGGTCAATCTCTGGG
ATGATAAGCTTGGACTGCAGAAATTCGGCGTGTCCTACCGTGAGTCAACGGAGGACGGGCAATCATGA

Upstream 100 bases:

>100_bases
GACTTGGTGCGCTTCAAAGAGACCCTGGCCACCGGCATCGGCCGCGAGAAGGCCTTTGGTATGGGGCTTCTGACGGTGAT
CCCGGAAGCGCGGTGACAAG

Downstream 100 bases:

>100_bases
TCGTGATCACGTTATCCAAAGTACCGCCATCGCTCAGAGGCGTTCTGACGAAGTGGTGCCAAGAGGTCCAGACCGGGGTC
TATGTTGGCCGGTTTAGCGC

Product: CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 315; Mature: 315

Protein sequence:

>315_residues
MESGAKKADLTELSRVRERVTFLYLEHAKINRQDSAIVVIDTGGTVAIPAALISVLMLGPGVDVTHRAMELMGDAGMSVV
WVGERGVRQYAPGRALTHSSALLVAQAKLVSNNRLRVGVARQMYQMRFPDDDVSTLSMQELRGKEGARVRRIYREESRRT
GVEWTHREYDPENYQSGSIINQALTAAHAALYGLSYSVIVALGASPGLGFVHTGHDLSFVYDFADLYKAEVTIPIAFTVA
ANATEQDDIGQLTRLAVRDAFVDGKLMIRMVADLKMLLGDVDDDLDADVVNLWDDKLGLQKFGVSYRESTEDGQS

Sequences:

>Translated_315_residues
MESGAKKADLTELSRVRERVTFLYLEHAKINRQDSAIVVIDTGGTVAIPAALISVLMLGPGVDVTHRAMELMGDAGMSVV
WVGERGVRQYAPGRALTHSSALLVAQAKLVSNNRLRVGVARQMYQMRFPDDDVSTLSMQELRGKEGARVRRIYREESRRT
GVEWTHREYDPENYQSGSIINQALTAAHAALYGLSYSVIVALGASPGLGFVHTGHDLSFVYDFADLYKAEVTIPIAFTVA
ANATEQDDIGQLTRLAVRDAFVDGKLMIRMVADLKMLLGDVDDDLDADVVNLWDDKLGLQKFGVSYRESTEDGQS
>Mature_315_residues
MESGAKKADLTELSRVRERVTFLYLEHAKINRQDSAIVVIDTGGTVAIPAALISVLMLGPGVDVTHRAMELMGDAGMSVV
WVGERGVRQYAPGRALTHSSALLVAQAKLVSNNRLRVGVARQMYQMRFPDDDVSTLSMQELRGKEGARVRRIYREESRRT
GVEWTHREYDPENYQSGSIINQALTAAHAALYGLSYSVIVALGASPGLGFVHTGHDLSFVYDFADLYKAEVTIPIAFTVA
ANATEQDDIGQLTRLAVRDAFVDGKLMIRMVADLKMLLGDVDDDLDADVVNLWDDKLGLQKFGVSYRESTEDGQS

Specific function: Unknown

COG id: COG1518

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789113, Length=264, Percent_Identity=39.3939393939394, Blast_Score=200, Evalue=9e-53,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002729
- InterPro:   IPR019851 [H]

Pfam domain/function: PF01867 DUF48 [H]

EC number: NA

Molecular weight: Translated: 34639; Mature: 34639

Theoretical pI: Translated: 5.23; Mature: 5.23

Prosite motif: PS00144 ASN_GLN_ASE_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.5 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.5 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MESGAKKADLTELSRVRERVTFLYLEHAKINRQDSAIVVIDTGGTVAIPAALISVLMLGP
CCCCCCCCHHHHHHHHHHHHHEEEEECHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
GVDVTHRAMELMGDAGMSVVWVGERGVRQYAPGRALTHSSALLVAQAKLVSNNRLRVGVA
CCCHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHH
RQMYQMRFPDDDVSTLSMQELRGKEGARVRRIYREESRRTGVEWTHREYDPENYQSGSII
HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
NQALTAAHAALYGLSYSVIVALGASPGLGFVHTGHDLSFVYDFADLYKAEVTIPIAFTVA
HHHHHHHHHHHHHCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHEEEEEEEEEEEE
ANATEQDDIGQLTRLAVRDAFVDGKLMIRMVADLKMLLGDVDDDLDADVVNLWDDKLGLQ
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
KFGVSYRESTEDGQS
HHCCCHHCCCCCCCC
>Mature Secondary Structure
MESGAKKADLTELSRVRERVTFLYLEHAKINRQDSAIVVIDTGGTVAIPAALISVLMLGP
CCCCCCCCHHHHHHHHHHHHHEEEEECHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHCC
GVDVTHRAMELMGDAGMSVVWVGERGVRQYAPGRALTHSSALLVAQAKLVSNNRLRVGVA
CCCHHHHHHHHHCCCCCEEEEECCCCHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEEHHH
RQMYQMRFPDDDVSTLSMQELRGKEGARVRRIYREESRRTGVEWTHREYDPENYQSGSII
HHHHHHCCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHH
NQALTAAHAALYGLSYSVIVALGASPGLGFVHTGHDLSFVYDFADLYKAEVTIPIAFTVA
HHHHHHHHHHHHHCCEEEEEEECCCCCCCEEECCCCHHHHHHHHHHHHEEEEEEEEEEEE
ANATEQDDIGQLTRLAVRDAFVDGKLMIRMVADLKMLLGDVDDDLDADVVNLWDDKLGLQ
CCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHH
KFGVSYRESTEDGQS
HHCCCHHCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]