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The map label for this gene is ygcH [C]

Identifier: 116493921

GI number: 116493921

Start: 354352

End: 354999

Strand: Direct

Name: ygcH [C]

Synonym: LSEI_0354

Alternate gene names: 116493921

Gene position: 354352-354999 (Clockwise)

Preceding gene: 116493920

Following gene: 116493922

Centisome position: 12.24

GC content: 62.65

Gene sequence:

>648_bases
ATGTATCTTTCACGAGTCCAAGTGAATACCAATGATCACCAGATTTTCAAGCACCTGACCCACCTTGGCGCCTATCACGA
CTGGGTCAAACGCAGCTTTCCTAGAGAAATTGCTGCGGGAACGCGGCTTCGCCACTTGTGGCGGCTCGATTCCCTGAACG
GCAGGGATTACCTGCTCGTGCTGAGCCCCGACGCCCCCGAGTTGGCGCAGCTCGCCCGCTACGGCGTGGCCGGCACTGCG
CAGACCAAGGACTATGACCCGTTCGTGACCGCCTTGCGTCAAGGCCAGCGCCTGCGCTTTCGGTTGACCGCCAATCCGAC
CCGGGCAATTGCTACCCCGGGCCAACGCGGGCACGTGGCGCCGCACGTAACGGTGGCCCAACAGATGGCCTGGCTGAGTG
AGCGTGCGGCGGCGCTGGGGTTTGAATTACCCATTGATGATGACGGCCCCCAGTTTCAGATTGTGGGCCGAGACTACCCG
GCTCTGCGGCGGGCGCAGGGGAAGCCGGTTCGACTGAGCCGGGTGAGCTTCGAAGGAACTTTGGTGGTGAGCGACTTGGT
GCGCTTCAAAGAGACCCTGGCCACCGGCATCGGCCGCGAGAAGGCCTTTGGTATGGGGCTTCTGACGGTGATCCCGGAAG
CGCGGTGA

Upstream 100 bases:

>100_bases
CGCCGTGACCAAGGTGCAGCTGGCCAATCCGGAATACAAGCCAGCGCCCACGGCCACTGCGCAGGATGCCTTCGGTCAAG
TATAGAGAGGAGGTACGTCA

Downstream 100 bases:

>100_bases
CAAGATGGAGTCGGGCGCAAAAAAGGCAGATCTGACCGAGCTCAGCCGGGTACGCGAGCGGGTGACTTTTCTGTATCTTG
AGCACGCCAAAATTAACCGC

Product: CRISPR-associated protein

Products: NA

Alternate protein names: CRISPR-Associated Protein; CRISPR-Associated Cse3 Family Protein; Cse3 Family CRISPR-Associated Protein; Transcriptional Regulator; CRISPR-Associated Helicase Cas3 Family Protein; CRISPR-Associated CSE3 Family Protein; CRISPR-Associated Protein Ct; Crispr-Associated Protein; CRISPR-Associated Protein CT

Number of amino acids: Translated: 215; Mature: 215

Protein sequence:

>215_residues
MYLSRVQVNTNDHQIFKHLTHLGAYHDWVKRSFPREIAAGTRLRHLWRLDSLNGRDYLLVLSPDAPELAQLARYGVAGTA
QTKDYDPFVTALRQGQRLRFRLTANPTRAIATPGQRGHVAPHVTVAQQMAWLSERAAALGFELPIDDDGPQFQIVGRDYP
ALRRAQGKPVRLSRVSFEGTLVVSDLVRFKETLATGIGREKAFGMGLLTVIPEAR

Sequences:

>Translated_215_residues
MYLSRVQVNTNDHQIFKHLTHLGAYHDWVKRSFPREIAAGTRLRHLWRLDSLNGRDYLLVLSPDAPELAQLARYGVAGTA
QTKDYDPFVTALRQGQRLRFRLTANPTRAIATPGQRGHVAPHVTVAQQMAWLSERAAALGFELPIDDDGPQFQIVGRDYP
ALRRAQGKPVRLSRVSFEGTLVVSDLVRFKETLATGIGREKAFGMGLLTVIPEAR
>Mature_215_residues
MYLSRVQVNTNDHQIFKHLTHLGAYHDWVKRSFPREIAAGTRLRHLWRLDSLNGRDYLLVLSPDAPELAQLARYGVAGTA
QTKDYDPFVTALRQGQRLRFRLTANPTRAIATPGQRGHVAPHVTVAQQMAWLSERAAALGFELPIDDDGPQFQIVGRDYP
ALRRAQGKPVRLSRVSFEGTLVVSDLVRFKETLATGIGREKAFGMGLLTVIPEAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 24093; Mature: 24093

Theoretical pI: Translated: 10.73; Mature: 10.73

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
1.4 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
1.4 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MYLSRVQVNTNDHQIFKHLTHLGAYHDWVKRSFPREIAAGTRLRHLWRLDSLNGRDYLLV
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEE
LSPDAPELAQLARYGVAGTAQTKDYDPFVTALRQGQRLRFRLTANPTRAIATPGQRGHVA
ECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCC
PHVTVAQQMAWLSERAAALGFELPIDDDGPQFQIVGRDYPALRRAQGKPVRLSRVSFEGT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCCCCEEEEEECCCCC
LVVSDLVRFKETLATGIGREKAFGMGLLTVIPEAR
HHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCC
>Mature Secondary Structure
MYLSRVQVNTNDHQIFKHLTHLGAYHDWVKRSFPREIAAGTRLRHLWRLDSLNGRDYLLV
CCCEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEE
LSPDAPELAQLARYGVAGTAQTKDYDPFVTALRQGQRLRFRLTANPTRAIATPGQRGHVA
ECCCCHHHHHHHHHCCCCCCCCCCCCHHHHHHHCCCEEEEEEECCCCEEEECCCCCCCCC
PHVTVAQQMAWLSERAAALGFELPIDDDGPQFQIVGRDYPALRRAQGKPVRLSRVSFEGT
CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCHHHHHCCCCCEEEEEECCCCC
LVVSDLVRFKETLATGIGREKAFGMGLLTVIPEAR
HHHHHHHHHHHHHHHHCCCHHHHCCCCEEECCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA