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The map label for this gene is ygcJ [H]

Identifier: 116493919

GI number: 116493919

Start: 352569

End: 353654

Strand: Direct

Name: ygcJ [H]

Synonym: LSEI_0352

Alternate gene names: 116493919

Gene position: 352569-353654 (Clockwise)

Preceding gene: 116493918

Following gene: 116493920

Centisome position: 12.18

GC content: 58.01

Gene sequence:

>1086_bases
ATGACTAACAAAAACCTCTACATCGACATTCACGTGCTTCAGACGGTTCCTTCCGCCAACATCAACCGGGATGACACGGG
CGCGCCCAAGAAGGCGTTATATGGTGGCGTCACGCGGGCCCGCGTTTCCTCCCAAAGCTGGAAGCGCGCGATGCGGCTTC
GCTTCAATCAAGAGGATCACGACGATGCCGGGCTTCGCACCAAAGAAGTGCCGCAGTTGCTGCGGCAGGCCCTGAAAGCG
GCGGCGCCGGCCTTGACCGATGAGGAAATCGCGGCCAAGGTCGATGCGGTGTTCTCAACGGCCAAAATCAAAATCACCAA
GGATGGCCAGACCGGTGCCCTGATGCTGATCAGCACCGGCCAGCTCAAGAAGCTTGCCCAGTACGCCTTGGATAATGAGG
CGCTGGACAAGAAGGAGCTGACCAAGCTGTTCAAGGGCGAGCAGTCGCTGGATCTAGCCTTGTTCGGCCGGATGGTCGCC
GATAATCCCGAGCTGAACGTTGAAGGGTCGGCCCAGGTCGCACATGCGATCTCGACGCACGAAATCGTCCCGGAGTTTGA
CTACTTCACGGCGCTGGACGATTTCAAGCCCGAAGACAATGCCGGGGCCGCGATGCTGGGAACGGTTGAGTACAATTCCT
CGACGCTGTATCGCTACGCCAATCTGAACTTTCAGGAGTTTGAGGCGAATATTGGCGGCCGGGCTGCCGTGTCAGGGGCG
CTGAGCTACATCAAGGAATTCCTGCTGTCGATGCCGAACGGGAAGCAGAACACTTTTGCTAACAAGACCTTGCCCAATTA
CGTGATGGTGACGCTGCGCCCGGACACCCCGGTCAACCTGGTGTCCGCGTTCGAAGACCCCGTGAAGTCTAATCATGGCT
ACGTCGAGGCTTCCGTCAAGCGGCTCGAGCAGGAATATCAGGACGCGCTGCAGTTTGTTGACGCGCCTTTGTTCACCGCC
GTGGTGGGGAAGACCAACGGTGAAGTCGGCGAGCAACAGGCCAACGTCAACGGGTTGCTTGATGCAGTGGGTGCGGTTTT
GAAGAAGGCGGTCAGCGATGAAAACGATCTCGATCAGGCTAACTAG

Upstream 100 bases:

>100_bases
TACTGGTTTCAGATGAGCTACGAACAGGCGAGTCGGGTGCGACTGCGCTGGGGGCAAGATTATTATGGGACTGTTTCCGC
AAACGAAAGGACAGAGCAAA

Downstream 100 bases:

>100_bases
CCCGCTGCAGTCGTACGGGAATGAGGCCCAGTTTGCGCGGCGGACGACCGGGGATTACCCCTCAAAAAGTGCGATTATCG
GGATGCTTGCGGCGGCGCTG

Product: CRISPR-associated protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 361; Mature: 360

Protein sequence:

>361_residues
MTNKNLYIDIHVLQTVPSANINRDDTGAPKKALYGGVTRARVSSQSWKRAMRLRFNQEDHDDAGLRTKEVPQLLRQALKA
AAPALTDEEIAAKVDAVFSTAKIKITKDGQTGALMLISTGQLKKLAQYALDNEALDKKELTKLFKGEQSLDLALFGRMVA
DNPELNVEGSAQVAHAISTHEIVPEFDYFTALDDFKPEDNAGAAMLGTVEYNSSTLYRYANLNFQEFEANIGGRAAVSGA
LSYIKEFLLSMPNGKQNTFANKTLPNYVMVTLRPDTPVNLVSAFEDPVKSNHGYVEASVKRLEQEYQDALQFVDAPLFTA
VVGKTNGEVGEQQANVNGLLDAVGAVLKKAVSDENDLDQAN

Sequences:

>Translated_361_residues
MTNKNLYIDIHVLQTVPSANINRDDTGAPKKALYGGVTRARVSSQSWKRAMRLRFNQEDHDDAGLRTKEVPQLLRQALKA
AAPALTDEEIAAKVDAVFSTAKIKITKDGQTGALMLISTGQLKKLAQYALDNEALDKKELTKLFKGEQSLDLALFGRMVA
DNPELNVEGSAQVAHAISTHEIVPEFDYFTALDDFKPEDNAGAAMLGTVEYNSSTLYRYANLNFQEFEANIGGRAAVSGA
LSYIKEFLLSMPNGKQNTFANKTLPNYVMVTLRPDTPVNLVSAFEDPVKSNHGYVEASVKRLEQEYQDALQFVDAPLFTA
VVGKTNGEVGEQQANVNGLLDAVGAVLKKAVSDENDLDQAN
>Mature_360_residues
TNKNLYIDIHVLQTVPSANINRDDTGAPKKALYGGVTRARVSSQSWKRAMRLRFNQEDHDDAGLRTKEVPQLLRQALKAA
APALTDEEIAAKVDAVFSTAKIKITKDGQTGALMLISTGQLKKLAQYALDNEALDKKELTKLFKGEQSLDLALFGRMVAD
NPELNVEGSAQVAHAISTHEIVPEFDYFTALDDFKPEDNAGAAMLGTVEYNSSTLYRYANLNFQEFEANIGGRAAVSGAL
SYIKEFLLSMPNGKQNTFANKTLPNYVMVTLRPDTPVNLVSAFEDPVKSNHGYVEASVKRLEQEYQDALQFVDAPLFTAV
VGKTNGEVGEQQANVNGLLDAVGAVLKKAVSDENDLDQAN

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

Organism=Escherichia coli, GI1789116, Length=320, Percent_Identity=33.75, Blast_Score=160, Evalue=2e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR010148 [H]

Pfam domain/function: PF09344 Cas_CT1975 [H]

EC number: NA

Molecular weight: Translated: 39447; Mature: 39316

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
1.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTNKNLYIDIHVLQTVPSANINRDDTGAPKKALYGGVTRARVSSQSWKRAMRLRFNQEDH
CCCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
DDAGLRTKEVPQLLRQALKAAAPALTDEEIAAKVDAVFSTAKIKITKDGQTGALMLISTG
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCEEEEEECH
QLKKLAQYALDNEALDKKELTKLFKGEQSLDLALFGRMVADNPELNVEGSAQVAHAISTH
HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
EIVPEFDYFTALDDFKPEDNAGAAMLGTVEYNSSTLYRYANLNFQEFEANIGGRAAVSGA
HCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHHCCCCCHHHHHHH
LSYIKEFLLSMPNGKQNTFANKTLPNYVMVTLRPDTPVNLVSAFEDPVKSNHGYVEASVK
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHH
RLEQEYQDALQFVDAPLFTAVVGKTNGEVGEQQANVNGLLDAVGAVLKKAVSDENDLDQA
HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
N
C
>Mature Secondary Structure 
TNKNLYIDIHVLQTVPSANINRDDTGAPKKALYGGVTRARVSSQSWKRAMRLRFNQEDH
CCCCEEEEEEEEECCCCCCCCCCCCCCCHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCC
DDAGLRTKEVPQLLRQALKAAAPALTDEEIAAKVDAVFSTAKIKITKDGQTGALMLISTG
CCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHEEEEEEEEECCCCCEEEEEECH
QLKKLAQYALDNEALDKKELTKLFKGEQSLDLALFGRMVADNPELNVEGSAQVAHAISTH
HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHHH
EIVPEFDYFTALDDFKPEDNAGAAMLGTVEYNSSTLYRYANLNFQEFEANIGGRAAVSGA
HCCCCCHHHHHHHCCCCCCCCCCEEEEEEEECCCEEEEEECCCHHHHHCCCCCHHHHHHH
LSYIKEFLLSMPNGKQNTFANKTLPNYVMVTLRPDTPVNLVSAFEDPVKSNHGYVEASVK
HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEHHHHH
RLEQEYQDALQFVDAPLFTAVVGKTNGEVGEQQANVNGLLDAVGAVLKKAVSDENDLDQA
HHHHHHHHHHHHHCCHHHHHHHCCCCCCCCCHHCCHHHHHHHHHHHHHHHHCCCCCCCCC
N
C

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9278503 [H]